Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14310 319 / 1e-110 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G41250 158 / 6e-47 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT5G44730 44 / 6e-05 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G037600 [exp] 171 / 2e-52 AT2G41250 371 / 2e-130 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.006G040800 [exp] 166 / 2e-50 AT2G41250 362 / 8e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.003G154500 [exp] 42 / 0.0002 AT5G44730 422 / 3e-151 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036740 [exp] 337 / 1e-117 AT1G14310 343 / 2e-120 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10037187 [exp] 333 / 2e-116 AT1G14310 335 / 3e-117 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10010452 [exp] 179 / 5e-55 AT2G41250 367 / 1e-128 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10039005 [exp] 178 / 7e-55 AT2G41250 384 / 4e-135 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10027299 [exp] 178 / 1e-54 AT2G41250 383 / 8e-135 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10015451 [exp] 52 / 9e-08 AT5G44730 417 / 1e-149 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF13419 [poplar] [flax] HAD_2 Haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.010G093900.2 pacid=42800306 polypeptide=Potri.010G093900.2.p locus=Potri.010G093900 ID=Potri.010G093900.2.v4.1 annot-version=v4.1 ATGGAAGCTTGCTTCGCGAAATGCTCTCATGGGAGCGCATTGTTTAAAGCTCTGAAACCTCTCAAATTGAAGCTATCAAGCTCTTCTTCCATGCCCATCC ACTCTGCTGGAGCTACAGAGTCTGTTAAAAAAGCATATGATGCGTTATTGTTGGATGCTGGTGGAACCCTTTTGCAATTGACACGGCCTGTTGAAGAAAC TTACGCTTCCATTGGAAGAAAATATGGTCTGACTGCAAGTTCTGCTGATATAAAGCAAGGATTTAAAAGAGCTTTCGCTGCTCCATGGCCTGAAAAACTC CGTTACCAGGGGGATGGGCGGCCATTTTGGAAACTTGTTGTTTCTGAAGCCACTGGTTCCACCAACAATGATTATTTTGAAGAAGTCTATAAGTACTATG CAAATGGCGAAGCCTGGTATCTTCCAGATGGAGCTTATGAAGCACTGTACCTTCTCAAAGATGCTGGAGTTAAGGTGGTCGTCGTGTCCAATTTCGACAC CCGGTTAAGGAAGCTATTGAAGGACCTAAATGTTATTGAACTGTTTGATTCTCTAATCATATCTTCAGAGGTTGGATATGAAAAACCAGATCCCAAGATA TTTGAAGCTGCTTTAGTTGAAGCAAGTGTAGAGGCAGGCAAGGCAGTGCATGTTGGGGACGATCTAAAGGCAGATAAGCAGGGGGCCAATGCCATTGGGA TTGATTGCTGGTTATGGGGAGCAGATGTGAAGACATTCTCAGATATCAAAAACCGCATCCTCGTCCATTACTAA
AA sequence Show only first row Show all	>Potri.010G093900.2 pacid=42800306 polypeptide=Potri.010G093900.2.p locus=Potri.010G093900 ID=Potri.010G093900.2.v4.1 annot-version=v4.1 MEACFAKCSHGSALFKALKPLKLKLSSSSSMPIHSAGATESVKKAYDALLLDAGGTLLQLTRPVEETYASIGRKYGLTASSADIKQGFKRAFAAPWPEKL RYQGDGRPFWKLVVSEATGSTNNDYFEEVYKYYANGEAWYLPDGAYEALYLLKDAGVKVVVVSNFDTRLRKLLKDLNVIELFDSLIISSEVGYEKPDPKI FEAALVEASVEAGKAVHVGDDLKADKQGANAIGIDCWLWGADVKTFSDIKNRILVHY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14310			Haloacid dehalogenase-like hyd...		Potri.010G093900 [exp]	0	1
AT1G64980			Nucleotide-diphospho-sugar tra...		Potri.011G117500 [exp]	26.60	0.8207
AT5G65810		CGR3	cotton Golgi-related 3, unknow...		Potri.002G114000 [exp]	30.16	0.8017
AT5G65270		AtRABA4a	RAB GTPase homolog A4A (.1)		Potri.005G073000 [exp]	56.70	0.7484	Pt-ATGB3.3
AT2G38680			5'-nucleotidases;magnesium ion...		Potri.010G243900 [exp]	63.21	0.7523
AT1G19910		AVA-2PE, ATVHA-...	VACUOLAR-TYPE H+ ATPASE C2, AT...		Potri.002G027200 [exp]	77.49	0.7762	AVA.1
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Potri.007G002600 [exp]	86.16	0.7837
AT5G10250		DOT3	DEFECTIVELY ORGANIZED TRIBUTAR...		Potri.013G024400 [exp]	92.46	0.7794
AT1G09645			unknown protein		Potri.003G005400 [exp]	97.04	0.7772
AT4G33220		PME44, ATPME44	A. THALIANA PECTIN METHYLESTER...		Potri.006G134500 [exp]	103.59	0.7702
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G069950 [exp]	107.83	0.7690

Compare expression of checked genes

Potri.010G093900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.