Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26850 1032 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G18030 856 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G10440 702 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G33170 689 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G00750 675 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G45750 644 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G43200 560 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G31850 475 / 2e-161 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G00740 474 / 5e-161 QUA3 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G19120 473 / 2e-160 ERD3 early-responsive to dehydration 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G147800 [exp] 1141 / 0 AT1G26850 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.012G069000 [exp] 965 / 0 AT1G26850 980 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.003G087600 [exp] 934 / 0 AT4G18030 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G146400 [exp] 913 / 0 AT4G18030 1008 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G454300 [exp] 706 / 0 AT1G33170 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.011G147600 [exp] 706 / 0 AT1G33170 984 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G137300 [exp] 687 / 0 AT4G00750 874 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G139000 [exp] 682 / 0 AT2G45750 880 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.014G075700 [exp] 663 / 0 AT4G00750 955 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037180 [exp] 1044 / 0 AT1G26850 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10012830 [exp] 1040 / 0 AT1G26850 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10030479 [exp] 1039 / 0 AT1G26850 1057 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10036747 [exp] 1036 / 0 AT1G26850 1042 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10039385 [exp] 924 / 0 AT1G26850 936 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10003014 [exp] 874 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10011045 [exp] 873 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10008619 [exp] 718 / 0 AT1G26850 727 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10008298 [exp] 704 / 0 AT4G10440 957 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10017357 [exp] 703 / 0 AT1G33170 948 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03141 [poplar] [flax] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.010G094100.1 pacid=42798191 polypeptide=Potri.010G094100.1.p locus=Potri.010G094100 ID=Potri.010G094100.1.v4.1 annot-version=v4.1 ATGGCGTTGAAAAGCAGTTCAGCTGATGGTAGAACTAGGAGTTCTATGCAAATATTTATTGTAGCTGGGTTATGCTGTTTTTTTTACATCTTGGGTGCAT GGCAAAGGAGTGGATTTGGCAAGGCTGACAATCTTGCCGAGAGGATTATCAAGAGTACAGAAGACTGTAATATCATTCCAAATCTTACTTTCGAGACCCA TCATGGTGGTGACATTGGGCCCGACGATGATTCTGAATCTAAATCCAAAATCTATCAGCCTTGCCCTTCTCGTTTTACTGATTATACCCCTTGTCAAGAT CAGAGTCGTGCTATGACTTTTCCGAGGGATAATATGATTTATCGGGAGAGACACTGTCCTCCTCAACAAGAGAAGCTACACTGCTTGATACCTGCTCCTA AAGGTTATGTCACCCCATTTCCTTGGCCTAAGAGTCGGGACTATGTCCCCTTTGCTAATGCACCCTATAAGAGCTTGACTGTCGAAAAGGCTATTCAGAA CTGGGTCCAGTACGAGGGCAACGTGTTTAGGTTTCCTGGTGGAGGAACACAGTTTCCACAAGGAGCAGATAAGTATATTGATCAACTAGCTTCGGTGTTG CCAATTGCTAACGGGACAGTCAGGACTGCATTGGACACTGGTTGTGGGGTTGCCAGTTTAGGTGCATACCTCTGGAGCAGGAATGTCATTGCCATGTCAT TTGCTCCGAGAGATTCACATGAAGCACAGGTCCAATTTGCACTTGAAAGAGGTGTACCTGCTGTTATTGGTGTTTTTGGTACTGTGAAGCTGCCATATCC ATCCAGAGCCTTTGATATGGCTCACTGCTCTCGTTGCTTGATTCCATGGGGAGCTAATGACGGGATGTACCTGATGGAAGTCGATCGAGTTCTCAGACCT GGTGGTTACTGGGTGCTTTCTGGACCTCCCATCAACTGGAAGAATAATTACAGATCATGGCAGCGTCCCAAGGAGGAACTTCAGGAGGAACAGAGAAAGA TTGAAGAGACCGCCAAGCTTCTTTGCTGGGATAAGAAGTATGAAAATGGTGAAATGGCCATTTGGCAAAAGAGATTAAATGCTGATTCCTGTCGTGGTAG ACAAGATGATTCTAGAGCTACCCTTTGCAAATCCACAGACACAGATGATGCGTGGTACAAGCAAATGGAGGCATGCGTTACTCCATATCCTGATAGTGGT AGCTCAGATGAAGTGGCTGGTGGGCAATTGAAGGTGTTTCCAGAGAGGCTTTATGCTGTCCCTCCGAGAGTTGCTAGTGGGTCCGTTCCTGGAGTTTCTG CTAAGACATACCAGGTGTACAATAAGGAATGGAAAAAGCATGTAAATGCTTATAAGAAAATCAATAAGCTTCTCGACTCTGGACGATATCGCAACATTAT GGATATGAATGCTGGGATGGGAGGATTTGCTGCCGCCCTTGAGTCTCCGAAACTGTGGGTTATGAATGTGGTGCCAACTATAGCTGAGAAAAGTACACTG GGTGTGATATATGAGAGAGGATTGATTGGAATCTATCATGACTGGTGTGAAGCTTTCTCCACATACCCAAGGACCTATGACCTTATTCATGCCAGTGGAG TATTCAGTTTATACAAAGACAGGTGTAACATGGAGGACATTCTTCTGGAGATGGATCGGATTTTGCGACCAGAAGGTGCAGTTATATTCCGTGATGAAGT CAATGTTCTAATTAAGGTGAGGAAGATGGTAGGACAAATGAGGTGGCATACAAAAATGGTGGACCATGAAGATGGTCCCTTAGTTCCTGAGAAGGTATTA GTTGCTGTCAAGCAGTATTGGGTTGCAGGTGGAAACTCCACGTCCACGCAGTGA
AA sequence Show only first row Show all	>Potri.010G094100.1 pacid=42798191 polypeptide=Potri.010G094100.1.p locus=Potri.010G094100 ID=Potri.010G094100.1.v4.1 annot-version=v4.1 MALKSSSADGRTRSSMQIFIVAGLCCFFYILGAWQRSGFGKADNLAERIIKSTEDCNIIPNLTFETHHGGDIGPDDDSESKSKIYQPCPSRFTDYTPCQD QSRAMTFPRDNMIYRERHCPPQQEKLHCLIPAPKGYVTPFPWPKSRDYVPFANAPYKSLTVEKAIQNWVQYEGNVFRFPGGGTQFPQGADKYIDQLASVL PIANGTVRTALDTGCGVASLGAYLWSRNVIAMSFAPRDSHEAQVQFALERGVPAVIGVFGTVKLPYPSRAFDMAHCSRCLIPWGANDGMYLMEVDRVLRP GGYWVLSGPPINWKNNYRSWQRPKEELQEEQRKIEETAKLLCWDKKYENGEMAIWQKRLNADSCRGRQDDSRATLCKSTDTDDAWYKQMEACVTPYPDSG SSDEVAGGQLKVFPERLYAVPPRVASGSVPGVSAKTYQVYNKEWKKHVNAYKKINKLLDSGRYRNIMDMNAGMGGFAAALESPKLWVMNVVPTIAEKSTL GVIYERGLIGIYHDWCEAFSTYPRTYDLIHASGVFSLYKDRCNMEDILLEMDRILRPEGAVIFRDEVNVLIKVRKMVGQMRWHTKMVDHEDGPLVPEKVL VAVKQYWVAGGNSTSTQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26850			S-adenosyl-L-methionine-depend...		Potri.010G094100 [exp]	0	1
AT5G26360			TCP-1/cpn60 chaperonin family ...		Potri.018G138200 [exp]	2.00	0.9291
AT5G20950			Glycosyl hydrolase family prot...		Potri.009G153900 [exp]	4.79	0.9001
AT1G80690			PPPDE putative thiol peptidase...		Potri.003G180400 [exp]	7.74	0.9162
AT1G23790			Plant protein of unknown funct...		Potri.008G192300 [exp]	8.94	0.9218
AT2G13560		NAD-ME1	NAD-dependent malic enzyme 1 (...		Potri.002G135300 [exp]	10.81	0.9084
AT3G14940		ATPPC3	phosphoenolpyruvate carboxylas...		Potri.011G110700 [exp]	10.81	0.8774	PEPC.2
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Potri.002G036600 [exp]	12.96	0.9147
AT1G34130		STT3B	staurosporin and temperature s...		Potri.015G028300 [exp]	13.41	0.9042
AT5G61970			signal recognition particle-re...		Potri.015G105600 [exp]	14.38	0.8857
AT5G44560		VPS2.2	SNF7 family protein (.1.2)		Potri.011G154700 [exp]	14.45	0.9032

Compare expression of checked genes

Potri.010G094100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.