Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70280 513 / 2e-179 NHL domain-containing protein (.1.2) AT1G23880 491 / 3e-170 NHL domain-containing protein (.1) AT5G14890 350 / 8e-113 NHL domain-containing protein (.1) AT3G14860 228 / 1e-68 NHL domain-containing protein (.1.2) AT1G23890 140 / 3e-38 NHL domain-containing protein (.1.2) AT1G56500 44 / 0.0002 haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G147700 [exp] 752 / 0 AT1G70280 568 / 0.0 NHL domain-containing protein (.1.2) Potri.016G092200 [exp] 506 / 7e-177 AT1G70280 465 / 3e-160 NHL domain-containing protein (.1.2) Potri.011G107800 [exp] 236 / 4e-72 AT3G14860 553 / 0.0 NHL domain-containing protein (.1.2) Potri.001G387500 [exp] 233 / 6e-70 AT3G14860 534 / 0.0 NHL domain-containing protein (.1.2) Potri.004G087300 [exp] 130 / 2e-33 AT1G23890 261 / 9e-84 NHL domain-containing protein (.1.2) Potri.017G129500 [exp] 127 / 4e-32 AT1G23890 247 / 3e-78 NHL domain-containing protein (.1.2) Potri.008G122450 [exp] 62 / 5e-12 AT1G23880 49 / 3e-08 NHL domain-containing protein (.1) Potri.009G072933 [exp] 52 / 1e-08 AT1G23880 44 / 7e-07 NHL domain-containing protein (.1) Potri.013G007800 [exp] 47 / 4e-05 AT1G56500 1489 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029176 [exp] 541 / 0 AT1G70280 540 / 0.0 NHL domain-containing protein (.1.2) Lus10012989 [exp] 495 / 3e-172 AT1G70280 538 / 0.0 NHL domain-containing protein (.1.2) Lus10030850 [exp] 476 / 1e-163 AT1G23880 464 / 2e-158 NHL domain-containing protein (.1) Lus10039484 [exp] 403 / 7e-136 AT1G70280 423 / 1e-143 NHL domain-containing protein (.1.2) Lus10014529 [exp] 333 / 2e-109 AT5G14890 355 / 8e-115 NHL domain-containing protein (.1) Lus10032158 [exp] 332 / 2e-109 AT1G70280 342 / 2e-113 NHL domain-containing protein (.1.2) Lus10039421 [exp] 303 / 3e-100 AT1G23880 329 / 1e-110 NHL domain-containing protein (.1) Lus10030637 [exp] 192 / 2e-56 AT1G70280 244 / 3e-76 NHL domain-containing protein (.1.2) Lus10030849 [exp] 134 / 8e-35 AT1G23890 271 / 7e-88 NHL domain-containing protein (.1.2) Lus10030639 [exp] 89 / 3e-19 AT1G23890 191 / 2e-57 NHL domain-containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G094200.4 pacid=42797717 polypeptide=Potri.010G094200.4.p locus=Potri.010G094200 ID=Potri.010G094200.4.v4.1 annot-version=v4.1 ATGCAAGTAATGGGCGAAATGGGGAAGAATGTGTTGGTTTTGTGTTTTATTTTGCTATTGTTTTTTGGAGGTGTCACTTCAGCTCCTACTACTACTTCAC CAGCAAAGATTGTTAGTGGGGTTTTCTCAAATGTCGTGCCTGCTTTCATGAAGTGGCTATGGTCTATGAAATCCACCACCAAAACAGTGATCTCTGGTCG TCCAATGATGAAGTTTGAGAGCGGGTATACCGTGGAGACAGTGTTTGATGGAAGCAAGCTCGGGATTGAGCCTTACTCCGTGCAGGTGTTGCCCAGTGGA GAGCTTCTGATTCTGGACTCTGTTAACAGTAACATTTACAGGATGTCTTCTTCCCTGTCTCTCTACAGCAGACCTAAGCTGGTAGCTGGATCCCATGAAG GATACTCTGGACATGTGGATGGAAAGTTGAGAGAGGCAAAGATGAACCACCCAAAAGGGCTTACTGTAGATGACAGAGGAAACATTTATATTGCAGACAC CATGAATATGGCAATCAGGAAGATAAGTGATGCAGGGGTTACAACAATTGCTGGAGGGAAATGGGGCCGAGGGAGCCATGTTGATGGGGCAAGTGAAGAT GCGAAGTTTTCTAATGATTTTGACGTGCTTTACATTGGAAGCAGTTGCTCCCTACTTGTTATAGACAGAGGAAACCAAGCCATCAGAGAGATCCAGCTGC ATTTTGATGACTGTGCTTATCAATATGGAAGTGGTTTTCCGCTTGGAATTGCAGTGCTGCTAGCAGCTGGCTTCTTCGGTTACATGCTAGCATTGCTGCA ACGCAGGGTGGGAATGATTGTTTCTCCTCAGAATGTTGCAATGGAAACTAGCACTACAGGAAATCCTTATCAGAAGCCTATCAAATCATTCAGGCCACCT TTAATCCCAACAGAAGATGAACAGGAGAAGCATGAGGAAGGCTTATTCGGATCCCTTGGCAAGCTTTTCATCAACACTTGGGCATCTATTGCAGAAATTT TGGGAGGCATAGTTCCCAGTTTCAGAAAGAAGCCACCAAGCTATCAGTATCAAAACTACCAGCAGCAATCAACTTCTTGGCCTGTGCAAGACAGCTTTGT GATACCAGATGAAGACGAGCCGCCTTCGACTGAAACCAGAACCCCAACGCCTAGGAAAACCTATCCATTCATGTCAAAGGATACAGAAAAGATGCATCAA TGGCGGCAAAGTCGTTCTATCTATAGTGGGTGGGATGGAGATTTTCAGCAGCAGCAGCAGCAGAAACAGCAGTATCATCATCGGTATCAATCCTCTACCC CACATACTTACTATGAGCAAAGCTACGAGAAAACCAATGAGATTGTGTTTGGGGCAGTTCAAGAGCAGGATGTGAAGCATGGAACTACGGTGATATTGCC TGTAAATTATGGAGATCCGATACACAACCGCCACAACATCCGCTCTCGAACCAATTCTCTGCATTAA
AA sequence Show only first row Show all	>Potri.010G094200.4 pacid=42797717 polypeptide=Potri.010G094200.4.p locus=Potri.010G094200 ID=Potri.010G094200.4.v4.1 annot-version=v4.1 MQVMGEMGKNVLVLCFILLLFFGGVTSAPTTTSPAKIVSGVFSNVVPAFMKWLWSMKSTTKTVISGRPMMKFESGYTVETVFDGSKLGIEPYSVQVLPSG ELLILDSVNSNIYRMSSSLSLYSRPKLVAGSHEGYSGHVDGKLREAKMNHPKGLTVDDRGNIYIADTMNMAIRKISDAGVTTIAGGKWGRGSHVDGASED AKFSNDFDVLYIGSSCSLLVIDRGNQAIREIQLHFDDCAYQYGSGFPLGIAVLLAAGFFGYMLALLQRRVGMIVSPQNVAMETSTTGNPYQKPIKSFRPP LIPTEDEQEKHEEGLFGSLGKLFINTWASIAEILGGIVPSFRKKPPSYQYQNYQQQSTSWPVQDSFVIPDEDEPPSTETRTPTPRKTYPFMSKDTEKMHQ WRQSRSIYSGWDGDFQQQQQQKQQYHHRYQSSTPHTYYEQSYEKTNEIVFGAVQEQDVKHGTTVILPVNYGDPIHNRHNIRSRTNSLH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70280			NHL domain-containing protein ...		Potri.010G094200 [exp]	0	1
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Potri.002G084800 [exp]	1.00	0.9275
AT5G12970			Calcium-dependent lipid-bindin...		Potri.001G015700 [exp]	2.00	0.9031
AT5G44560		VPS2.2	SNF7 family protein (.1.2)		Potri.011G154700 [exp]	2.44	0.9176
AT5G55230		ATMAP65-1	microtubule-associated protein...		Potri.011G092500 [exp]	3.16	0.9227
AT2G01210			Leucine-rich repeat protein ki...		Potri.010G120100 [exp]	6.92	0.8836
AT2G34190			Xanthine/uracil permease famil...		Potri.011G068200 [exp]	8.66	0.9012
AT5G24318			O-Glycosyl hydrolases family 1...		Potri.001G240000 [exp]	9.38	0.8644
AT5G41880		POLA4, POLA3	DNA primases;DNA primases (.1)		Potri.003G104700 [exp]	9.79	0.9005
AT1G01225			NC domain-containing protein-r...		Potri.014G101300 [exp]	10.24	0.8958
AT5G04885			Glycosyl hydrolase family prot...		Potri.008G013500 [exp]	10.48	0.8458

Compare expression of checked genes

Potri.010G094200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.