Plant FIBer expression Database

SPDSYN2.2 (Potri.010G094600) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol SPDSYN2.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G70310 538 / 0 SPDS2 spermidine synthase 2 (.1)
AT1G23820 533 / 0 SPDS1 spermidine synthase 1 (.1.2)
AT5G53120 414 / 4e-145 SPMS, SPDS3, ATSPDS3 spermidine synthase 3 (.1.2.3.4.5.6)
AT5G19530 125 / 5e-33 ACL5 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G147200
[exp]
615 / 0 AT1G70310 532 / 0.0 spermidine synthase 2 (.1)
Potri.012G002600
[exp]
419 / 4e-147 AT5G53120 582 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6)
Potri.015G018900
[exp]
404 / 3e-141 AT5G53120 545 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6)
Potri.010G089200
[exp]
122 / 5e-32 AT5G19530 447 / 2e-158 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Potri.008G151800
[exp]
116 / 1e-29 AT5G19530 445 / 7e-158 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Potri.006G222200
[exp]
110 / 1e-27 AT5G19530 533 / 0.0 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029169
[exp]
539 / 0 AT1G23820 562 / 0.0 spermidine synthase 1 (.1.2)
Lus10012996
[exp]
527 / 0 AT1G23820 537 / 0.0 spermidine synthase 1 (.1.2)
Lus10030629
[exp]
525 / 0 AT1G70310 531 / 0.0 spermidine synthase 2 (.1)
Lus10030861
[exp]
505 / 0 AT1G23820 514 / 0.0 spermidine synthase 1 (.1.2)
Lus10039416
[exp]
497 / 1e-178 AT1G23820 509 / 0.0 spermidine synthase 1 (.1.2)
Lus10019016
[exp]
421 / 6e-148 AT5G53120 571 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6)
Lus10003398
[exp]
416 / 8e-146 AT5G53120 563 / 0.0 spermidine synthase 3 (.1.2.3.4.5.6)
Lus10018259
[exp]
353 / 5e-122 AT1G23820 374 / 6e-130 spermidine synthase 1 (.1.2)
Lus10040649
[exp]
172 / 5e-52 AT1G23820 139 / 2e-39 spermidine synthase 1 (.1.2)
Lus10010538
[exp]
132 / 1e-35 AT5G19530 439 / 1e-155 ACAULIS 5, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF01564 Spermine_synth Spermine/spermidine synthase domain
Representative CDS sequence
>Potri.010G094600.1 pacid=42797917 polypeptide=Potri.010G094600.1.p locus=Potri.010G094600 ID=Potri.010G094600.1.v4.1 annot-version=v4.1
ATGGCTGAAGAGAGTGTTGTTACTGATTTGCCAGTGAAGAGGCCAAGAGAAGATGAAGAGAATGGAGCCTCTGCTGCCACTGAAGCCATGGAGACAGAGA
CCAACAATAACGATTATATCTCCTCCGTTATTACTGGCTGGTTCTCTGAGATTAGCCCAATGTGGCCTGGAGAGGCGCATTCCTTGAAAGTAGAGAAGAT
CTTATTTCAAGGGAAGTCTGACTATCAGAATGTTATGGTCTTTCAGTCATCAACATATGGAAAGGTTCTAGTTTTAGATGGGGTAATTCAACTCACTGAG
AGGGATGAATGTGCATATCAAGAAATGATCACTCACCTTCCACTTTGCTCAATTGCTAACCCAAAGAAGGTTTTGGTTATTGGTGGAGGAGATGGTGGGG
TCCTACGGGAAGTGGCTCGACACTCTTCTGTTGAGCAGATTGACATATGTGAAATAGATAAGATGGTTGTTGATGTTTCTAAAAAATTCTTCCCTGACGT
ATCAGTCGGGTATGAGGATCCCCGTGTGTCTCTCCATATTGGTGATGGAGTTGCATTTTTAAAAGCTGTTCCTGAAGGTACTTATGATGCAGTTATAGTA
GATTCTTCCGATCCAATAGGTCCTGCTCAAGAGCTTTTTGAGAAGCCCTTTTTTGAGTCAGTAGCAAAGGCTCTCCGTCCAGGAGGAGTTGTGAGCACAC
AAGCAGAAAGTATATGGCTTCACATGAACATCATTGAAGATATTGTGGCAAACTGCCGTCAGATCTTCAAAGGCTCCGTCAACTATGCATGGACTACTGT
TCCTACGTACCCAAGTGGAATGATTGGTTTCATGCTTTGCTCGACTGAGGGACCTGCCGTTGATTTCAAGCATCCAGTTAATCCTATAGATTCCAATGAT
AGTCAAAGCAAATCAAAACCCTTGAAGTTTTACAACTCAGAGTTGCATACAGCGGCTTTCTGTTTGCCTTCTTTTGCAAAGAAGGTGATTGATTCAAAAG
CTAAATGA
AA sequence
>Potri.010G094600.1 pacid=42797917 polypeptide=Potri.010G094600.1.p locus=Potri.010G094600 ID=Potri.010G094600.1.v4.1 annot-version=v4.1
MAEESVVTDLPVKRPREDEENGASAATEAMETETNNNDYISSVITGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTE
RDECAYQEMITHLPLCSIANPKKVLVIGGGDGGVLREVARHSSVEQIDICEIDKMVVDVSKKFFPDVSVGYEDPRVSLHIGDGVAFLKAVPEGTYDAVIV
DSSDPIGPAQELFEKPFFESVAKALRPGGVVSTQAESIWLHMNIIEDIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPAVDFKHPVNPIDSND
SQSKSKPLKFYNSELHTAAFCLPSFAKKVIDSKAK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G70310 SPDS2 spermidine synthase 2 (.1) Potri.010G094600
[exp]
0 1 SPDSYN2.2
AT3G14860 NHL domain-containing protein ... Potri.001G387500
[exp]
3.46 0.7992
AT1G07830 ribosomal protein L29 family p... Potri.014G111100
[exp]
8.77 0.7656
AT1G73720 SMU1 SUPPRESSORS OF MEC-8 AND UNC-5... Potri.011G156900
[exp]
12.96 0.7252
AT5G60390 GTP binding Elongation factor ... Potri.010G219500
[exp]
16.30 0.7613
AT3G58610 ketol-acid reductoisomerase (.... Potri.004G043700
[exp]
17.43 0.7581 Pt-PGAAIR.3
AT3G17465 RPL3P ribosomal protein L3 plastid (... Potri.010G002300
[exp]
19.97 0.7532 Pt-RPL3.3
AT3G15460 Ribosomal RNA processing Brix ... Potri.001G403100
[exp]
24.73 0.7273
AT1G60030 ATNAT7 ARABIDOPSIS NUCLEOBASE-ASCORBA... Potri.010G095500
[exp]
28.98 0.7782
Potri.008G020500
[exp]
29.24 0.7678
AT5G03795 Exostosin family protein (.1) Potri.014G171100
[exp]
29.66 0.7781

Potri.010G094600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.