Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60200 320 / 4e-95 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (.1) AT2G43370 52 / 9e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G71800 51 / 3e-06 CSTF64 cleavage stimulating factor 64 (.1) AT3G52150 45 / 0.0001 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G19350 44 / 0.0004 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G147100 [exp] 1050 / 0 AT1G60200 323 / 1e-96 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (.1) Potri.002G061200 [exp] 53 / 8e-07 AT1G71800 354 / 3e-117 cleavage stimulating factor 64 (.1) Potri.007G028300 [exp] 48 / 3e-05 AT2G18510 453 / 4e-160 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.005G125300 [exp] 47 / 4e-05 AT2G18510 412 / 3e-144 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.016G090700 [exp] 44 / 0.0002 AT2G37220 302 / 4e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.003G107200 [exp] 45 / 0.0003 AT5G51300 830 / 0.0 splicing factor-related (.1.2.3) Potri.009G065900 [exp] 43 / 0.0007 AT3G52150 237 / 2e-78 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G126400 [exp] 44 / 0.0008 AT5G51300 790 / 0.0 splicing factor-related (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013003 [exp] 407 / 5e-127 AT1G60200 638 / 0.0 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (.1) Lus10029161 [exp] 395 / 1e-122 AT1G60200 566 / 0.0 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (.1) Lus10030623 [exp] 348 / 8e-106 AT1G60200 558 / 0.0 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (.1) Lus10030866 [exp] 348 / 9e-105 AT1G60200 593 / 0.0 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein (.1) Lus10014814 [exp] 57 / 4e-08 AT1G71800 350 / 2e-116 cleavage stimulating factor 64 (.1) Lus10017923 [exp] 55 / 2e-07 AT1G71800 306 / 4e-98 cleavage stimulating factor 64 (.1) Lus10028714 [exp] 53 / 9e-07 AT1G71800 308 / 1e-100 cleavage stimulating factor 64 (.1) Lus10025557 [exp] 49 / 1e-05 AT2G43370 345 / 1e-118 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10006055 [exp] 49 / 1e-05 AT1G71800 288 / 3e-92 cleavage stimulating factor 64 (.1) Lus10027015 [exp] 46 / 0.0001 AT2G43370 347 / 3e-119 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [poplar] [flax] PF01480 [poplar] [flax] PWI PWI domain
Representative CDS sequence Show only first row Show all	>Potri.010G094700.1 pacid=42797553 polypeptide=Potri.010G094700.1.p locus=Potri.010G094700 ID=Potri.010G094700.1.v4.1 annot-version=v4.1 ATGGCGGAGGATTCTTCCTCATCTCCCTCTCTCGCTCCCGGTATTCTAGACCCCAATTCCTTAAAAACTGAACCCCTAAATAACAACAGTAACCCTACAC CCCAGCCCGATGCCACAATGACACCCACACCGGCGATTACCTCCTACGCGCCGCCTCCGCAGCTGGCTCCCTCATTCCGTCCAGTTTCTGCTCCCCCCCC TGCTGCTGCACAATTTTATCAAAACCCTAGCGTTGGCGTCCCCCCCATGATGCCGCCGTATCAGGTTCAGCCAGGTGTTCAGGCCCCGAGACCACACTAC GCGCCCATTCCCAATGGTTATCAGGGGAATATCGCTCCCCCACCTGGAATTATGCGCTACCCCTCCCCATATCCAGCAATGGTTCGCCCCTTGTTTCCTC CACGCCCTCCTGGAGCACTTAGTGTGGTTCCAGCAGTGCCTCGACCCCTTGTTCCTGGGATTCCCGGTGTTCGCCCAGTTATGTACCCAATTATCAGGCC AGTAATTCCTTCTGTGACACCAGCTGAGAAACCACAAACCACAGTTTATATTGGCAAGATAGCACCATCCGTGGAAAATGATTTTATGATGTCCCTCCTT CAGTTTTGTGGACCTGTCAAGAGTTGGAAACGTCCTCAAGATCCTGCTAATGGAACTCCTAGAGGTTTTGGATTTTGTGAATTTGAATCTGCTGAAGGGG TTCTCCGAGCATTACGACTACTGACTAAATTTAACATTGATGGGCAAGAACTAATGTTAAATGTTAATCAAGCAACCAAAGAATATCTGGAGCGGTATGT CGAAAAGAAAACTGAAAACTCAAAGAATTTCAAAGAGACTCAAGTAGCAGATACTGGCAAGGAGGATGGAACAGGCATTGATGGCAAGAAGGGTGAATTT TCCAAATCCTCTGCTGAGGACTCAAACAATGATAGTGACAAAGGGAACAAAGAAAATCATGACCTTGCTAACTTTGGTATTGTGACTGATGAAGACAAGG CAGGTGACCGAGAGGCTATAGAGAAGCTTACTAGCATGATAGAAGAGAGGTTAAAGACCAAACCTCTACCTCCCCCTCCACCACCTTCACTAGCACCCGC AGATGGTTCTGGGAATTCAAATTTGGAATTGCCATCTAAATCAAGAGATGGTGACACCGATGCAGACATAATGAGAAGTGTTGAAGGAAAAAATGATGAC GAAACAAGCAGTGACAATAAAGCTGCAAGCGAACAGGACAGGCCTGAAACGAGCTCACCTGATAGGAGTAGAGGGTATGACAGGAGAAGCAGAGATAGAG ACAGAGAACGAGATCTAAAACGGGAAAAAGAACGAGAAATTGAAAGATATGAAAGGGAAACAGAACGAGAGCGTGTTAGGAAAGAGAGGGAGCAAAGAAG GAAGATCGAGGAAGCTGAGCGTGAGTATGAAGAACGCCTCAGAGATTGGGAGTATAGGGAGAGAGAGAAGGAGAAACAGAGGCAGTATGAGAAGGAGAGG GATAAGGAAAGAGAACGCAAACGAAGGAAGGAGATACTTCATGACGAGGAAGATGAAGATGATGATTCGAGAAAAAGGTGGCGTAGAAGTGCTTTAGAGG ATAGACGAAGGAAGAGACTACGGGAGAAGGAGGATGACTTGGCTGATAGGCTCAAAGAAGAGGAAGAAATTGCCGAGTCCAAGAGGAGAGACGAGGAAGA AAAGCTTCAGGAGAAACAGAAAGATGAATTGAAACTCTTGTCTGGACATGTCTTGAATGAAAGTGAAATGACCAATCTGGCAGAAGGACCTATTGTTGAA AGTAAAGATGAGGCCATTGAAAAAGACTATGATGGTGATTCTGGTAATGAAAACCTTGCAGGCGATGAGGTATTACAAAATGGTAATGGTGATGAATCAA ACATGGCATTAATGGCTGAACCAGATACACGACATAATGGTAGTGCTCCTGCAAGAAAGTTGGGCTTTGGTTTAGTTGGCTCTGGAAAACGAGCTGCTGT CCCGTCTGTTTTCCATGAAGAGGAGGATGATGATGCACGTAAGGAGAAGAAGATGAGGCCACTGGTTCCCATTGATTATTCAACTGAGGAGCTCCAGGCT GTCCAACCTGCTGTTTCTGGAGCACAGCCACCAAATCTTGTTGCCGCTGCAGAATTTGCAAAGCGAATATCAAATGTTGCTCCCAAAGAGGAGAAGCCTG ATGTAGAGCGAGAAAGGAGCAGACGCTCTCACGATAGGTCTAGCCAGCGGGATAGGGACCGTAATGAGGACAACATTAATCGAAACAGAGATGATAACAA AGAGAAGGTTCCTGAACGGGACAGGGACAGGGACCGGAACCGAGATCATGGACTGGATAAAGTCAAGACACCAGATAAACAGAAGCTTTTGGATGCGAAG CAATTGATTGATATGATCCCAAAAACCAAGGAGGAGCTATTCTTATATGAGATAAATTGGGCTGTGTATGACAAGCATGAGCTTCATGAGAGAATGAGAC CTTGGATATCAAAGAAGATTACAGAGTTCTTGGGAGAGGAAGAAACCACGTTGGTTGATTATATTGTATCGAGTACTCAGGAACATGTGAAGGCATCTCA AATGCTGGAGATGCTTCAGGCTATATTAGATGATGAAGCTGAAATGTTTGTCCTCAAGATGTGGAGGATGCTCATCTTTGAAATTAAGAAAGTGGAAACG GGCCTTTCTCTGAGGTCAAAATCATGA
AA sequence Show only first row Show all	>Potri.010G094700.1 pacid=42797553 polypeptide=Potri.010G094700.1.p locus=Potri.010G094700 ID=Potri.010G094700.1.v4.1 annot-version=v4.1 MAEDSSSSPSLAPGILDPNSLKTEPLNNNSNPTPQPDATMTPTPAITSYAPPPQLAPSFRPVSAPPPAAAQFYQNPSVGVPPMMPPYQVQPGVQAPRPHY APIPNGYQGNIAPPPGIMRYPSPYPAMVRPLFPPRPPGALSVVPAVPRPLVPGIPGVRPVMYPIIRPVIPSVTPAEKPQTTVYIGKIAPSVENDFMMSLL QFCGPVKSWKRPQDPANGTPRGFGFCEFESAEGVLRALRLLTKFNIDGQELMLNVNQATKEYLERYVEKKTENSKNFKETQVADTGKEDGTGIDGKKGEF SKSSAEDSNNDSDKGNKENHDLANFGIVTDEDKAGDREAIEKLTSMIEERLKTKPLPPPPPPSLAPADGSGNSNLELPSKSRDGDTDADIMRSVEGKNDD ETSSDNKAASEQDRPETSSPDRSRGYDRRSRDRDRERDLKREKEREIERYERETERERVRKEREQRRKIEEAEREYEERLRDWEYREREKEKQRQYEKER DKERERKRRKEILHDEEDEDDDSRKRWRRSALEDRRRKRLREKEDDLADRLKEEEEIAESKRRDEEEKLQEKQKDELKLLSGHVLNESEMTNLAEGPIVE SKDEAIEKDYDGDSGNENLAGDEVLQNGNGDESNMALMAEPDTRHNGSAPARKLGFGLVGSGKRAAVPSVFHEEEDDDARKEKKMRPLVPIDYSTEELQA VQPAVSGAQPPNLVAAAEFAKRISNVAPKEEKPDVERERSRRSHDRSSQRDRDRNEDNINRNRDDNKEKVPERDRDRDRNRDHGLDKVKTPDKQKLLDAK QLIDMIPKTKEELFLYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQEHVKASQMLEMLQAILDDEAEMFVLKMWRMLIFEIKKVET GLSLRSKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60200			splicing factor PWI domain-con...		Potri.010G094700 [exp]	0	1
AT1G10890			unknown protein		Potri.001G211000 [exp]	2.44	0.8548
AT5G04290		SPT5L, KTF1	SPT5-LIKE, kow domain-containi...		Potri.008G032800 [exp]	3.16	0.8658
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Potri.003G148501 [exp]	3.87	0.8429
AT4G20740		EMB3131	EMBRYO DEFECTIVE 3131, Pentatr...		Potri.003G203100 [exp]	4.00	0.8400
AT5G49430			WD40/YVTN repeat-like-containi...		Potri.010G142700 [exp]	4.24	0.8352
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Potri.001G289800 [exp]	5.47	0.8362
AT3G23900			RNA recognition motif (RRM)-co...		Potri.017G058300 [exp]	5.74	0.8242
AT1G33390		ATFAS4	FASCIATED STEM 4, RNA helicase...		Potri.002G201400 [exp]	6.48	0.8297
AT3G50670		U1SNRNP, U1-70K	U1 small nuclear ribonucleopro...		Potri.007G026900 [exp]	8.48	0.7967
AT5G55100			SWAP (Suppressor-of-White-APri...		Potri.001G356800 [exp]	10.00	0.8245

Compare expression of checked genes

Potri.010G094700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.