Plant FIBer expression Database

Potri.010G094800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G10520 724 / 0 AtPol{lambda} DNA polymerase {lambda}, DNA polymerase lambda (POLL) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030656
[exp]
716 / 0 AT1G10520 744 / 0.0 DNA polymerase {lambda}, DNA polymerase lambda (POLL) (.1)
Lus10030831
[exp]
684 / 0 AT1G10520 704 / 0.0 DNA polymerase {lambda}, DNA polymerase lambda (POLL) (.1)
Lus10007325
[exp]
203 / 5e-63 AT1G10520 234 / 2e-75 DNA polymerase {lambda}, DNA polymerase lambda (POLL) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0459 BRCT-like PF00533 BRCT BRCA1 C Terminus (BRCT) domain
CL0198 HHH PF10391 DNA_pol_lambd_f Fingers domain of DNA polymerase lambda
CL0198 HHH PF14716 HHH_8 Helix-hairpin-helix domain
CL0198 PF14791 DNA_pol_B_thumb DNA polymerase beta thumb
CL0260 NTP_transf PF14792 DNA_pol_B_palm DNA polymerase beta palm
Representative CDS sequence
>Potri.010G094800.1 pacid=42796817 polypeptide=Potri.010G094800.1.p locus=Potri.010G094800 ID=Potri.010G094800.1.v4.1 annot-version=v4.1
ATGGCGCCAAAGCGAAAGAAAAGTCCTTCAATCGATCCCCAGGGAATTTTCTCTGGAATGGTTGTGTTTTTGGTCGAAACTGGAGTCCAGTCACGTCGCT
TACAGATTTGGAAGCAGAAGCTGGTCCAAATGGGTGCTACTACTGAGGAGCGCTTATCAAAGAAAGTCACTCATGTTTTTGCTATTAATTCACAGGCCCT
TCTCCAACAATTGGATGGACAACTTCTAAAACGCTTTAAACCAAGGGTTCTCCTCTATCAATGGCTAGAGGACAGTTTGAGATCAGGGGAGAAAGTTTCC
GAGGATCAATATCATCTTCTAGTTGACATGGAAGGAGAGAATACAAAAGACAAGTCTTTGGTTTTGAAATTAGTCAATGAGAACACTTCCAGTGCTGATG
AACTGTCACCTCACAATGAAAAGATCAAATCTGATGTGAAGAAATTCAAATCAGATGCAGAAAATAAAGGTTTGTCTGAGGTGCCAAATAGTCCTGGAAG
TTCTGACAGCTCACCTCTCTCACAAACCCTTACCAATCCAATACCCTCCAGTACTCTGCATTCAGATTTATCTTTGCCCTACAGTCCACCTGATTTAAAC
AGGAGCATAACCGAGATATTTGGAAAACTCATCAACATATACAGGGCTTTGGGTGACGATAGAAGGTCATTCAGCTATTACAAGGCTATTCCTGTTGTTG
AGAAGTTGCCATTTAAAATTGAGAGTGCAGACCAGGTCAAAGATTTGCCTGGCATAGGAAAGTCAATGCAGGATCATATCCAGGAGATAGTTACTACTGG
GAAATTATCCAAGTTGGAGCACTTTGAGACAGATGAAAAGGTACGGACGATTAGTTTATTTGGGGAAGTTTGGGGTATTGGTCCAGCCACGGCTCTAAAA
TTTTATGAGAAGGGTCATCGCACGCTGGAGGATCTGAAGAATGAAGATTCACTGACACATTCACAGAAGTTAGGATTAAAATATTTTGATGATATTAAGA
CGAGGATTCCACGCCATGAGGTTCAAGAAATGGAACTATTGCTACAGAAAACTGGTGAAGAGATTTTACCTGGGGTCGACATTTTATGTGGAGGATCATA
TAGACGTGGAAAAGCTTCTTGTGGTGATTTGGACATCGTGATCACGCACCCTGATGGGAAAAGTCATAAAGGTTTTCTAACAAGATACGTGAAGCGTTTA
AAGGATATGAAATTCCTAAGAGAGGATTTGATTTTCAGTACTCACAGTGAGGAGGGTACTGATTCAGGTGTTGACACGTATTTTGGGCTTTGCACATATC
CTGGGCGAGAACTGCGGCATCGAATAGACTTTAAGGTTTATCCAAGGGACATATATGCTTTTGGTCTAGTAGCATGGACAGGGAATGATGTATTAAACAG
GAGGCTGAGACTGCTAGCAGAATCCAAAGGATATCGGCTTGATGATACTGGATTATTTCCAGCTACCCAGGCTTCAGGTGGCAAGCGAGGTGCAAGAGCT
AGTGCAAGTCTGAGATTTGACAATGAAAAAGAGGTGTTTGATTTCCTAGGATTTCCTTGGCTTGAACCGCATGAAAGAAATCTATGA
AA sequence
>Potri.010G094800.1 pacid=42796817 polypeptide=Potri.010G094800.1.p locus=Potri.010G094800 ID=Potri.010G094800.1.v4.1 annot-version=v4.1
MAPKRKKSPSIDPQGIFSGMVVFLVETGVQSRRLQIWKQKLVQMGATTEERLSKKVTHVFAINSQALLQQLDGQLLKRFKPRVLLYQWLEDSLRSGEKVS
EDQYHLLVDMEGENTKDKSLVLKLVNENTSSADELSPHNEKIKSDVKKFKSDAENKGLSEVPNSPGSSDSSPLSQTLTNPIPSSTLHSDLSLPYSPPDLN
RSITEIFGKLINIYRALGDDRRSFSYYKAIPVVEKLPFKIESADQVKDLPGIGKSMQDHIQEIVTTGKLSKLEHFETDEKVRTISLFGEVWGIGPATALK
FYEKGHRTLEDLKNEDSLTHSQKLGLKYFDDIKTRIPRHEVQEMELLLQKTGEEILPGVDILCGGSYRRGKASCGDLDIVITHPDGKSHKGFLTRYVKRL
KDMKFLREDLIFSTHSEEGTDSGVDTYFGLCTYPGRELRHRIDFKVYPRDIYAFGLVAWTGNDVLNRRLRLLAESKGYRLDDTGLFPATQASGGKRGARA
SASLRFDNEKEVFDFLGFPWLEPHERNL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G10520 AtPol{lambda} DNA polymerase {lambda}, DNA p... Potri.010G094800
[exp]
0 1
AT5G11380 DXPS3 1-deoxy-D-xylulose 5-phosphate... Potri.006G249700
[exp]
2.00 0.8466
AT5G65685 UDP-Glycosyltransferase superf... Potri.007G009600
[exp]
3.87 0.8597
AT3G52060 Core-2/I-branching beta-1,6-N-... Potri.010G242900
[exp]
5.91 0.8312
AT5G66180 S-adenosyl-L-methionine-depend... Potri.007G056800
[exp]
9.16 0.8001
AT5G13020 AtEML3, ACK1 EMSY-like 3, Emsy N Terminus (... Potri.001G229000
[exp]
11.48 0.8347
AT4G30935 WRKY ATWRKY32, WRKY3... WRKY DNA-binding protein 32 (.... Potri.006G264000
[exp]
11.66 0.7739
AT2G47210 MYB myb-like transcription factor ... Potri.014G117400
[exp]
13.74 0.8415
AT1G72040 P-loop containing nucleoside t... Potri.019G081600
[exp]
14.31 0.8347
AT3G12250 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (... Potri.003G194600
[exp]
15.71 0.8033
AT1G21650 SECA2 Preprotein translocase SecA fa... Potri.002G078000
[exp]
18.65 0.8341

Potri.010G094800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.