Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24050 166 / 1e-52 RNA-processing, Lsm domain (.1) AT1G70220 104 / 5e-28 RNA-processing, Lsm domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G146200 [exp] 296 / 6e-104 AT1G24050 167 / 5e-53 RNA-processing, Lsm domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010705 [exp] 179 / 4e-58 AT1G24050 135 / 2e-41 RNA-processing, Lsm domain (.1) Lus10029189 [exp] 77 / 3e-19 ND 35 / 0.002
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09793 [poplar] [flax] AD Anticodon-binding domain
Representative CDS sequence Show only first row Show all	>Potri.010G095601.1 pacid=42797806 polypeptide=Potri.010G095601.1.p locus=Potri.010G095601 ID=Potri.010G095601.1.v4.1 annot-version=v4.1 ATGGCAATGGAAGGTAGCAACATCAACAGCAACAGAGAAGACTTTACGGTGGGTTGCTTGCTTTCTATCAAAACCACCTTAGGCGAAGAGTTTCATGGAC AAGTCATTACCTTTGACCGGCCCTCCAACATCCTCGTTCTTCAAGAGGGATCGAAACCTGGTCCGAAGAAAAACATAAGGTTTTTGAAAGCAAATTATAT AAAGGAGTTTTCTTTTCTGGGTCAAGCCGAGGACCCACTTGACATCAAGAAATGTTATATTGATCTCCACAGTCTTCAAGCCAGGGAGGAATTGGCTTTA AGGCAAGCAGAAGCAGATGCTGAGAGGATTGGAGTGGGTGTCACTGCTGAGGCACAGGGCATTTTTTATGCCTTGTCTAAGACGCTTCCAGTTCGCTGGG ACAAAACATCCATAGTTGTGATGAATGAAGTTCATGTTAGTAGTCCATACCTGCCTGAATGTGTCAGTGGAGGAACTCCTGCTGCCAATGACAGGGTGAA GAAAGTGCTTGAGCTCGAGAGGAAGAGGTTGCAAGCTCGTGGTGCCAGTCAGTGA
AA sequence Show only first row Show all	>Potri.010G095601.1 pacid=42797806 polypeptide=Potri.010G095601.1.p locus=Potri.010G095601 ID=Potri.010G095601.1.v4.1 annot-version=v4.1 MAMEGSNINSNREDFTVGCLLSIKTTLGEEFHGQVITFDRPSNILVLQEGSKPGPKKNIRFLKANYIKEFSFLGQAEDPLDIKKCYIDLHSLQAREELAL RQAEADAERIGVGVTAEAQGIFYALSKTLPVRWDKTSIVVMNEVHVSSPYLPECVSGGTPAANDRVKKVLELERKRLQARGASQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24050			RNA-processing, Lsm domain (.1...		Potri.010G095601 [exp]	0	1
AT4G33865			Ribosomal protein S14p/S29e fa...		Potri.002G119600 [exp]	8.83	0.8969
AT3G52590		HAP4, ERD16, UB...	HAPLESS 4, EARLY-RESPONSIVE TO...		Potri.015G007100 [exp]	17.05	0.8859	UBQ1.4
AT1G49410		TOM6	translocase of the outer mitoc...		Potri.009G110100 [exp]	17.66	0.8255
AT5G23340			RNI-like superfamily protein (...		Potri.005G088800 [exp]	20.68	0.7932
AT2G05840		PAA2	20S proteasome subunit PAA2 (....		Potri.006G140400 [exp]	21.93	0.8577
AT3G53740			Ribosomal protein L36e family ...		Potri.015G145800 [exp]	22.24	0.8802
AT1G05780			Vacuolar ATPase assembly integ...		Potri.001G160500 [exp]	22.80	0.7844
AT4G25740			RNA binding Plectin/S10 domain...		Potri.005G040100 [exp]	24.24	0.8819
AT5G57290			60S acidic ribosomal protein f...		Potri.009G032600 [exp]	25.09	0.8717
AT5G50460			secE/sec61-gamma protein trans...		Potri.015G097300 [exp]	28.61	0.8430	SEC61.2

Compare expression of checked genes

Potri.010G095601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.