Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70230 481 / 1e-169 AXY4, TBL27 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) AT4G01080 310 / 1e-101 TBL26 TRICHOME BIREFRINGENCE-LIKE 26 (.1) AT1G01430 308 / 8e-101 TBL25 TRICHOME BIREFRINGENCE-LIKE 25 (.1) AT5G15890 308 / 4e-100 TBL21 TRICHOME BIREFRINGENCE-LIKE 21 (.1) AT4G23790 291 / 1e-94 TBL24 TRICHOME BIREFRINGENCE-LIKE 24 (.1) AT3G28150 286 / 4e-93 AXY4L, TBL22 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) AT4G11090 285 / 2e-92 TBL23 TRICHOME BIREFRINGENCE-LIKE 23 (.1) AT5G15900 278 / 2e-89 TBL19 TRICHOME BIREFRINGENCE-LIKE 19 (.1) AT5G51640 243 / 2e-75 TBL17, YLS7 YELLOW-LEAF-SPECIFIC GENE 7, TRICHOME BIREFRINGENCE-LIKE 17, Plant protein of unknown function (DUF828) (.1) AT4G25360 235 / 7e-72 TBL18 TRICHOME BIREFRINGENCE-LIKE 18 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G146100 [exp] 730 / 0 AT1G70230 494 / 2e-174 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) Potri.002G168400 [exp] 320 / 1e-105 AT1G01430 495 / 4e-174 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Potri.014G095800 [exp] 316 / 3e-104 AT1G01430 498 / 2e-175 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Potri.001G093800 [exp] 313 / 5e-103 AT4G11090 516 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Potri.003G137800 [exp] 313 / 9e-103 AT4G11090 500 / 4e-176 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Potri.004G105700 [exp] 303 / 5e-99 AT5G15900 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.004G105600 [exp] 291 / 6e-95 AT5G15900 411 / 5e-142 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Potri.017G073700 [exp] 290 / 2e-94 AT3G28150 442 / 3e-154 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1) Potri.004G105500 [exp] 280 / 2e-90 AT5G15900 398 / 1e-136 TRICHOME BIREFRINGENCE-LIKE 19 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029188 [exp] 547 / 0 AT1G70230 461 / 5e-161 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) Lus10010704 [exp] 544 / 0 AT1G70230 459 / 2e-160 ALTERED XYLOGLUCAN 4, TRICHOME BIREFRINGENCE-LIKE 27 (.1) Lus10029454 [exp] 333 / 7e-111 AT1G01430 488 / 2e-171 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Lus10005952 [exp] 328 / 4e-110 AT1G01430 464 / 5e-163 TRICHOME BIREFRINGENCE-LIKE 25 (.1) Lus10034087 [exp] 301 / 2e-98 AT5G15890 490 / 1e-172 TRICHOME BIREFRINGENCE-LIKE 21 (.1) Lus10032367 [exp] 300 / 3e-97 AT4G11090 521 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Lus10033950 [exp] 295 / 1e-95 AT4G11090 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 23 (.1) Lus10003061 [exp] 293 / 1e-95 AT5G15900 488 / 5e-172 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Lus10024167 [exp] 263 / 3e-84 AT5G15900 381 / 3e-130 TRICHOME BIREFRINGENCE-LIKE 19 (.1) Lus10039438 [exp] 258 / 7e-82 AT3G28150 431 / 8e-150 ALTERED XYLOGLUCAN 4-LIKE, TRICHOME BIREFRINGENCE-LIKE 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p CL0264 [poplar] [flax] PF14416 [poplar] [flax] PMR5N PMR5 N terminal Domain
Representative CDS sequence Show only first row Show all	>Potri.010G095700.1 pacid=42799427 polypeptide=Potri.010G095700.1.p locus=Potri.010G095700 ID=Potri.010G095700.1.v4.1 annot-version=v4.1 ATGGGCAGCCCATTCAAAGACCACCACACCCTCCATCCCTCTCTTGTTAGGAAGCTCATTCCATGGACCTTCTATGCTATGGTCCCTTTAGTTCTCTTTC GCGTGTATTTATACCCTTACCCCCTCCACCACACCACCACAACCATTCTCACCTCCTCCCCTGTTTCTCCTCCCCCTGCTTTATTAGAAGATGAAACTTC TTGTGACTACACCGATGGCAATTGGGTACCTGATAGGAGGGATCCTTTGTATAACGGTTCAACCTGCGGTACAATCAAGGAAGGCCAGAGTTGCATTGCC CATGGCAGGCCGGACATGGGTTATCTCTACTGGAGATGGAAACCGAAGCAATGTAAGCTTCCAAGGTTTGAACCCAACACATTTCTCCAACTCCTTAGAA ACAAACATTTAGCTTTTGTCGGTGACTCTATGGCTAGAAACCAATTGGAGTCACTTCTTTGCATGCTATCCTCTGTCTCTCCCCCTAATCTTGTTTATCG AGATGGTGAAGAAAACAAGTTTCGTAGATGGTATTTTGAGTCTCACAATTTCAGCATCTCAGTCTATTGGTCACCGTTTCTTGTTAGAGGCGTGGAAAAA TCCAATACTGGTCTCAACCATAACCAGCTGTTTTTGGATCACGTTGATGAGAGATGGGCTGCTGACATGAATGGAATTGACATGGTTGTGTTATCAATTG GGCATTGGTTCTTACATCCAGCAGTATATTATGAAGGTGATCAAGTACTAGGTTGTCATTACTGCCCTGATCTTAATCACACTGAGATTGGATTTTATGA TATCTTGAGGAAGGCTATAAAGACCACACTTAAGGCTCTAGTTGACAGGAAAGGGCCTAATGCCAATGGTTTTGATGCACTCGTGACTACTTTTTCACCA GCCCATTTCGAAGGTGATTGGGATAAGTTAGGTGCTTGTCCAAAAACCGAGCCTTATAAGGAGGGAGAGAAAACACTTGAAGGGATGGATGCGGAGATGA GACAAGTCGAGGTTGAAGAAGTGGAAGCTGCGAAAATGAATTCTGTGCAGCTTGAAAAGTTCAGATTAGAGGCACTCGATGTTTCCAAGTTGTCATTGAT GAGGCCAGATGGTCACCCAGGTCCATATATGCATCCATTTCCATTTGCTTACGGTGTAGCTGAGCGTGTGCAAAACGATTGTGTGCATTGGTGCTTGCCA GGGCCTATAGATACTTGGAATGAGATTTTACTCGAGGTGATAAAGAAGTGGGAGTACGAATCAAGAAGAGAACAGTGA
AA sequence Show only first row Show all	>Potri.010G095700.1 pacid=42799427 polypeptide=Potri.010G095700.1.p locus=Potri.010G095700 ID=Potri.010G095700.1.v4.1 annot-version=v4.1 MGSPFKDHHTLHPSLVRKLIPWTFYAMVPLVLFRVYLYPYPLHHTTTTILTSSPVSPPPALLEDETSCDYTDGNWVPDRRDPLYNGSTCGTIKEGQSCIA HGRPDMGYLYWRWKPKQCKLPRFEPNTFLQLLRNKHLAFVGDSMARNQLESLLCMLSSVSPPNLVYRDGEENKFRRWYFESHNFSISVYWSPFLVRGVEK SNTGLNHNQLFLDHVDERWAADMNGIDMVVLSIGHWFLHPAVYYEGDQVLGCHYCPDLNHTEIGFYDILRKAIKTTLKALVDRKGPNANGFDALVTTFSP AHFEGDWDKLGACPKTEPYKEGEKTLEGMDAEMRQVEVEEVEAAKMNSVQLEKFRLEALDVSKLSLMRPDGHPGPYMHPFPFAYGVAERVQNDCVHWCLP GPIDTWNEILLEVIKKWEYESRREQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70230		AXY4, TBL27	ALTERED XYLOGLUCAN 4, TRICHOME...		Potri.010G095700 [exp]	0	1
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.001G395700 [exp]	4.89	0.8593
AT1G17620			Late embryogenesis abundant (L...		Potri.001G200700 [exp]	7.28	0.8718
AT1G22640	MYB	AtMYB3	ARABIDOPSIS THALIANA MYB DOMA...		Potri.015G041100 [exp]	15.90	0.8519	Pt-MYB.36
AT5G25810	AP2_ERF	TNY, TINY	TINY, Integrase-type DNA-bindi...		Potri.001G187500 [exp]	16.27	0.8616
AT1G65870			Disease resistance-responsive ...		Potri.016G060700 [exp]	16.91	0.8705
AT3G22142			Bifunctional inhibitor/lipid-t...		Potri.016G015500 [exp]	17.97	0.8384
AT3G05950			RmlC-like cupins superfamily p...		Potri.019G025800 [exp]	20.27	0.8663
AT2G03550			alpha/beta-Hydrolases superfam...		Potri.009G105100 [exp]	23.06	0.7937
AT3G05950			RmlC-like cupins superfamily p...		Potri.019G026000 [exp]	24.00	0.8629
AT2G38050		DWF6, DET2, ATD...	DWARF 6, DE-ETIOLATED 2, 3-oxo...		Potri.013G134433 [exp]	26.11	0.8288

Compare expression of checked genes

Potri.010G095700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.