Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24040 287 / 5e-96 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) AT1G72030 50 / 1e-06 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT2G23060 42 / 0.0003 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G146000 [exp] 449 / 2e-159 AT1G24040 317 / 9e-108 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Potri.005G054600 [exp] 50 / 5e-07 AT1G72030 216 / 1e-69 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.001G261800 [exp] 42 / 0.0002 AT5G13780 301 / 8e-106 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.018G032400 [exp] 40 / 0.0006 AT5G11340 270 / 4e-94 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030837 [exp] 272 / 1e-89 AT1G24040 289 / 2e-96 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2) Lus10030649 [exp] 244 / 2e-78 AT1G24040 276 / 2e-91 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1), Acyl-CoA N-acyltransferases (NAT) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [poplar] [flax] Acetyltrans PF00583 [poplar] [flax] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Potri.010G095800.1 pacid=42796924 polypeptide=Potri.010G095800.1.p locus=Potri.010G095800 ID=Potri.010G095800.1.v4.1 annot-version=v4.1 ATGGCTGCAACGATCTCGGTCTCAGCCTCTCTCAATCTCTTCTCAGATTCACAACCCTACAAAAGACTGCCCTTAATTCTTTCACCCCCAAATCTACAAC AACCTTTCCTTTCTCTCCACAAATCTTGCTATTTCAACTCCAGATTCTGTTTCTCCTCAAACTGCTCCTCCTCCTCCTCCTCCTCAACAACAGCAACAGA AACAGAAACAGAAACAGAAACACCAAGTGCTTCCACCACCTACTCCTATATTGAGGATTCATACAAAACAGGGAGGTTCTTGAGCAATGAAGAGATTGAA AAGCTAAAAGCACTTCAAGATTTCAGATGCTATCAACAACTTGAAACTGGGTCTTTGTTGGTTAGGGTGATGAAGCCGGGGGAGATGGATATCACTGTTA AATTGCTAGCAGAGTCATTTGTTGAGTCTATGTCGTTGCCTGTTGGTTATGTGTCTTTGGTTTGCTACTTTGTGCAGCAGTACTTGACTGAAAGGCGAGC TGCAATACCACATGCCGTTACGCTTATTGGGTTTTATAAAGGGAAACAAGAGACGAATGGTGGAGAAGAGGAGGAGGACCTCGAAGAGTTGGCAGGGACT GTAGAGGTTTGTTTTGACAAAAGGGGGGCTAATGCTTCTCCTCCTACACCTACCCCTCCAAAAAATGCTCCTTACATTTGCAACATGGCTGTTAAGCAGT CACATCGTAGGAGGGGAATTGGGTGGAATCTTCTGAAGGCAAGCGAGGAACTAATTTCCAAGATGAGTAGTATGCGAGACGTGTACTTGCACTGCAGAAT GATTGATTCAGCCCCTTTCAACATGTACACAAAAGCAGGTTACAACATCGTTAAAACTGATAGCATATGGGTCCTTTTGATGTTGCAGAGGCGCAAACAT TTGATGTGCAAGAAACTTTTAGTCTCAAAGAATCCTTCAGAACTCGATACTTCAGGCTCCGATATGGAATTTTCTTCACAAATGGATACATGGAAGTCAT GA
AA sequence Show only first row Show all	>Potri.010G095800.1 pacid=42796924 polypeptide=Potri.010G095800.1.p locus=Potri.010G095800 ID=Potri.010G095800.1.v4.1 annot-version=v4.1 MAATISVSASLNLFSDSQPYKRLPLILSPPNLQQPFLSLHKSCYFNSRFCFSSNCSSSSSSSTTATETETETETPSASTTYSYIEDSYKTGRFLSNEEIE KLKALQDFRCYQQLETGSLLVRVMKPGEMDITVKLLAESFVESMSLPVGYVSLVCYFVQQYLTERRAAIPHAVTLIGFYKGKQETNGGEEEEDLEELAGT VEVCFDKRGANASPPTPTPPKNAPYICNMAVKQSHRRRGIGWNLLKASEELISKMSSMRDVYLHCRMIDSAPFNMYTKAGYNIVKTDSIWVLLMLQRRKH LMCKKLLVSKNPSELDTSGSDMEFSSQMDTWKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24040			Acyl-CoA N-acyltransferases (N...		Potri.010G095800 [exp]	0	1
AT1G36280			L-Aspartase-like family protei...		Potri.010G193400 [exp]	1.41	0.9125
AT4G10790			UBX domain-containing protein ...		Potri.001G085600 [exp]	5.83	0.9114
AT5G52660	MYB		Homeodomain-like superfamily p...		Potri.004G073300 [exp]	6.63	0.8906
					Potri.001G078100 [exp]	7.48	0.8698
AT1G07030			Mitochondrial substrate carrie...		Potri.009G077600 [exp]	10.09	0.8863
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Potri.008G087800 [exp]	10.58	0.8684
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Potri.010G139300 [exp]	12.12	0.8643
AT3G10480	NAC	ANAC050	NAC domain containing protein ...		Potri.010G229700 [exp]	13.41	0.8723
AT5G65550			UDP-Glycosyltransferase superf...		Potri.010G182650 [exp]	13.52	0.8307
AT5G20700			Protein of unknown function (D...		Potri.006G139200 [exp]	14.07	0.8926

Compare expression of checked genes

Potri.010G095800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.