Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24030 589 / 0 Protein kinase superfamily protein (.1.2) AT1G20650 277 / 9e-91 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT3G20530 275 / 1e-89 Protein kinase superfamily protein (.1) AT5G13160 275 / 4e-89 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT5G18610 273 / 1e-87 Protein kinase superfamily protein (.1.2) AT5G02800 268 / 4e-87 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT2G17220 268 / 1e-86 Kin3 kinase 3, Protein kinase superfamily protein (.1.2) AT3G24550 273 / 5e-86 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT3G24790 263 / 1e-85 Protein kinase superfamily protein (.1) AT3G58690 264 / 2e-85 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G145900 [exp] 676 / 0 AT1G24030 587 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G421400 [exp] 283 / 5e-93 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.011G137000 [exp] 281 / 3e-92 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Potri.010G215100 [exp] 277 / 7e-91 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G166900 [exp] 279 / 1e-90 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.001G060800 [exp] 279 / 2e-90 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.010G021500 [exp] 278 / 2e-89 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G205700 [exp] 277 / 5e-89 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.005G252000 [exp] 273 / 6e-89 AT1G20650 531 / 0.0 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029187 [exp] 638 / 0 AT1G24030 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010703 [exp] 636 / 0 AT1G24030 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10011148 [exp] 280 / 2e-91 AT3G20530 560 / 0.0 Protein kinase superfamily protein (.1) Lus10015756 [exp] 281 / 4e-91 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10043050 [exp] 278 / 6e-91 AT3G20530 561 / 0.0 Protein kinase superfamily protein (.1) Lus10040050 [exp] 273 / 5e-89 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Lus10012814 [exp] 276 / 1e-88 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033966 [exp] 276 / 1e-88 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10034757 [exp] 271 / 2e-87 AT1G61590 624 / 0.0 Protein kinase superfamily protein (.1) Lus10019897 [exp] 268 / 3e-87 AT5G02800 533 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.010G095900.1 pacid=42797883 polypeptide=Potri.010G095900.1.p locus=Potri.010G095900 ID=Potri.010G095900.1.v4.1 annot-version=v4.1 ATGCCTTTTGGGTTAGTCTCAGCATGGAACAAGCGACGGAGAAGCAAGTCCCAAGATCACTCAGACCCTTGGGTTTATAAACCTATGGAGTTTTGGCAAC TTGAAGATCAAACACCTCAATCCACAAAGAGACGTCATGGATCATCGGTTTTCACACTCAAGGAAATGGAAGAAGCAACGTGTTCTTTCAGTGAAAAAAA TTTGGTTGGAAAAGGGGGATTTGGACGAGTCTATAGAGGCGTCCTGCGGTCAGGAGAGGTTGTAGCAATCAAGAAAATGGAGCTGCCCACATTTAAAGAA GCTGAAGGGGAACGGGAGTTTCGTGTAGAAGTTGACATCTTGAGCAGACTTGAGCACCCCAATCTGGTTTCCTTGATTGGATATTGTGCTGATGGGAAGG ATAGGTTTCTAGTGTATGAATATCTGCAACATGGGAATCTGCAAGATCATTTAAATGGATATGGAAAAGCAAAAATGGAATGGCCTTTAAGGTTAAAAGT GGCACTTGGATCAGCAAGGGGCCTTGCTTATCTCCATTCAAGTTCTGATGTTGGCATACCAATTGTCCACAGAGATTTTAAATCCACCAACATCCTTCTA AATGCAAATTTTGAAGCTAAGATATCTGATTTTGGTCTTGCAAAGTTGATGCCGGAGGGGCAGGAGATATTTGTGACTGCAAGAGTTCTCGGAACATTTG GGTATTTCGATCCCGAGTATACATCGACAGGGAAACTCACTTTACAAAGTGATGTCTATGCATTCGGTGTGGTTCTTCTTGAGCTTTTGACTGGGCGTAG AGCGGTAGACTTAAACCAGGGACCAAGTGATCAAAACCTTGTCCTACAGGTTAGGCATATTTTGAATGATCGGAAAAAATTACGCAAGGTAATTGATCCT GAGCTTAGTCGGAGTTCATACACATTGGAATCTATTGCTATGTTTGCCAACCTGGCTTCACGCTGCATCCGCATTCAGAGCAGTGAGAGACCCTCCATGG CTGAATGTGTGAAAGAACTCCAAACAATTATCTACACAAATTCAAAACCCATGGGCATGGGCATGGGCATGGGCATGATGACTTTCAAATTGGTCTAA
AA sequence Show only first row Show all	>Potri.010G095900.1 pacid=42797883 polypeptide=Potri.010G095900.1.p locus=Potri.010G095900 ID=Potri.010G095900.1.v4.1 annot-version=v4.1 MPFGLVSAWNKRRRSKSQDHSDPWVYKPMEFWQLEDQTPQSTKRRHGSSVFTLKEMEEATCSFSEKNLVGKGGFGRVYRGVLRSGEVVAIKKMELPTFKE AEGEREFRVEVDILSRLEHPNLVSLIGYCADGKDRFLVYEYLQHGNLQDHLNGYGKAKMEWPLRLKVALGSARGLAYLHSSSDVGIPIVHRDFKSTNILL NANFEAKISDFGLAKLMPEGQEIFVTARVLGTFGYFDPEYTSTGKLTLQSDVYAFGVVLLELLTGRRAVDLNQGPSDQNLVLQVRHILNDRKKLRKVIDP ELSRSSYTLESIAMFANLASRCIRIQSSERPSMAECVKELQTIIYTNSKPMGMGMGMGMMTFKLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24030			Protein kinase superfamily pro...		Potri.010G095900 [exp]	0	1
AT3G23090			TPX2 (targeting protein for Xk...		Potri.010G076200 [exp]	1.00	0.9675
AT1G63910	MYB	AtMYB103	myb domain protein 103 (.1)		Potri.001G099800 [exp]	2.00	0.9480
AT3G27960			Tetratricopeptide repeat (TPR)...		Potri.008G094700 [exp]	2.82	0.9559
AT5G17420		ATCESA7, MUR10,...	MURUS 10, IRREGULAR XYLEM 3, C...		Potri.006G181900 [exp]	3.00	0.9522	Pt-CESA2.1
AT3G42950			Pectin lyase-like superfamily ...		Potri.006G139500 [exp]	3.46	0.9470
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Potri.004G059600 [exp]	4.69	0.9428	CESA.2
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.010G244900 [exp]	5.29	0.9453
AT2G41610			unknown protein		Potri.014G108300 [exp]	5.91	0.9479
AT1G56720			Protein kinase superfamily pro...		Potri.005G003300 [exp]	6.70	0.9377
AT5G64030			S-adenosyl-L-methionine-depend...		Potri.005G065200 [exp]	6.92	0.9423

Compare expression of checked genes

Potri.010G095900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.