Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67630 57 / 2e-10 EMB2814, POLA2 EMBRYO DEFECTIVE 2814, DNA polymerase alpha 2 (.1) AT1G60050 40 / 0.0001 Nodulin MtN21 /EamA-like transporter family protein (.1) AT3G18200 39 / 0.0007 nodulin MtN21 /EamA-like transporter family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G145800 [exp] 91 / 2e-22 AT3G28050 283 / 2e-93 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G055900 [exp] 75 / 1e-16 AT1G67630 837 / 0.0 EMBRYO DEFECTIVE 2814, DNA polymerase alpha 2 (.1) Potri.001G032100 [exp] 65 / 3e-13 AT3G28050 224 / 3e-70 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192900 [exp] 50 / 4e-08 AT3G28050 222 / 1e-69 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.015G073200 [exp] 45 / 4e-06 AT5G40240 254 / 4e-82 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.002G029100 [exp] 41 / 8e-05 AT1G75500 578 / 0.0 Walls Are Thin 1 (.1.2) Potri.010G096100 [exp] 40 / 0.0002 AT1G70260 415 / 4e-145 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.007G017800 [exp] 39 / 0.0003 AT1G75500 414 / 4e-144 Walls Are Thin 1 (.1.2) Potri.015G042900 [exp] 39 / 0.0004 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010695 [exp] 77 / 2e-17 AT3G28050 280 / 3e-92 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10015820 [exp] 60 / 3e-11 AT1G67630 738 / 0.0 EMBRYO DEFECTIVE 2814, DNA polymerase alpha 2 (.1) Lus10036982 [exp] 59 / 5e-11 AT1G67630 765 / 0.0 EMBRYO DEFECTIVE 2814, DNA polymerase alpha 2 (.1) Lus10034877 [exp] 51 / 2e-08 AT5G40230 207 / 3e-64 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10033412 [exp] 49 / 2e-07 AT5G40230 121 / 7e-32 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039429 [exp] 47 / 1e-06 AT3G28050 354 / 6e-120 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039428 [exp] 45 / 3e-06 AT3G28050 343 / 2e-117 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10041801 [exp] 44 / 8e-06 AT1G75500 365 / 6e-126 Walls Are Thin 1 (.1.2) Lus10039479 [exp] 43 / 2e-05 AT3G28050 457 / 1e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10038959 [exp] 41 / 9e-05 AT3G18200 497 / 2e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G096301.1 pacid=42796769 polypeptide=Potri.010G096301.1.p locus=Potri.010G096301 ID=Potri.010G096301.1.v4.1 annot-version=v4.1 ATGGCATGTCCAATTTCGTCTCTCCATTACTCTAACGCCCTTGCTCCCCTCATTCTTCTCCCTTCTTCTTTCTTCCTTCACAGATCAGAGAGGCCTCCGC TCACCTTCCCTATCGTCAGTGTATTCTTCTTGCTTGGCCTATCTGTTTGGCTGGCACAGATATTTGGGGAAGCTGGAATTAACTTGAGCTGCTTGCTACA CTTGGCACAGCCTTATTCCTGGTCTTACTTTCATACTTGCCGTTGCTTTCAGGTGTTGTCCCTGGGTGAAGGGGAAGAGCGAAGGAAGTGCATTTGCATA AACCCAGGAAGAATGGCAAAGGGAGGAGGTGGCTCTTTTGATGAGCTTAACTACCAAGGGAGTCCTTACAAAGATGAATGCTTCAATTATAGGCATTAA
AA sequence Show only first row Show all	>Potri.010G096301.1 pacid=42796769 polypeptide=Potri.010G096301.1.p locus=Potri.010G096301 ID=Potri.010G096301.1.v4.1 annot-version=v4.1 MACPISSLHYSNALAPLILLPSSFFLHRSERPPLTFPIVSVFFLLGLSVWLAQIFGEAGINLSCLLHLAQPYSWSYFHTCRCFQVLSLGEGEERRKCICI NPGRMAKGGGGSFDELNYQGSPYKDECFNYRH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Potri.010G096301 [exp]	0	1
					Potri.001G181701 [exp]	9.64	0.8287
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Potri.001G229166 [exp]	15.49	0.8039
					Potri.006G211800 [exp]	16.00	0.8181
AT2G17710			unknown protein		Potri.005G107800 [exp]	22.51	0.8068
AT1G15170			MATE efflux family protein (.1...		Potri.010G117000 [exp]	23.21	0.7944
AT3G62630			Protein of unknown function (D...		Potri.013G010400 [exp]	27.05	0.7291
AT2G34470		PSKF109, UREG	urease accessory protein G (.1...		Potri.002G243700 [exp]	27.92	0.7977	Pt-EU3.1
AT3G21690			MATE efflux family protein (.1...		Potri.011G002500 [exp]	32.72	0.7761
AT2G47115			unknown protein		Potri.002G190200 [exp]	32.86	0.7884
AT2G20142			Toll-Interleukin-Resistance (T...		Potri.019G069733 [exp]	35.32	0.7938

Compare expression of checked genes

Potri.010G096301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.