Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-THRRS.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26830 827 / 0 Threonyl-tRNA synthetase (.1) AT1G17960 391 / 2e-132 Threonyl-tRNA synthetase (.1) AT2G04842 385 / 2e-127 EMB2761 EMBRYO DEFECTIVE 2761, threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (.1) AT1G18130 207 / 9e-65 Class II aaRS and biotin synthetases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G145600 [exp] 959 / 0 AT5G26830 1100 / 0.0 Threonyl-tRNA synthetase (.1) Potri.014G162200 [exp] 377 / 7e-124 AT2G04842 1089 / 0.0 EMBRYO DEFECTIVE 2761, threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005351 [exp] 888 / 0 AT5G26830 1088 / 0.0 Threonyl-tRNA synthetase (.1) Lus10021402 [exp] 880 / 0 AT5G26830 1093 / 0.0 Threonyl-tRNA synthetase (.1) Lus10030841 [exp] 795 / 0 AT5G26830 1007 / 0.0 Threonyl-tRNA synthetase (.1) Lus10030645 [exp] 783 / 0 AT5G26830 946 / 0.0 Threonyl-tRNA synthetase (.1) Lus10012360 [exp] 362 / 2e-118 AT2G04842 1035 / 0.0 EMBRYO DEFECTIVE 2761, threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (.1) Lus10030843 [exp] 257 / 1e-82 AT5G26830 248 / 2e-77 Threonyl-tRNA synthetase (.1) Lus10030644 [exp] 166 / 2e-49 AT1G17960 150 / 3e-44 Threonyl-tRNA synthetase (.1) Lus10006406 [exp] 75 / 6e-16 AT2G04842 203 / 6e-63 EMBRYO DEFECTIVE 2761, threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (.1) Lus10030584 [exp] 45 / 0.0001 AT3G54630 471 / 7e-161 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [poplar] [flax] tRNA_synt_II PF00587 [poplar] [flax] tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T) CL0458 [poplar] [flax] IIaaRS-ABD PF03129 [poplar] [flax] HGTP_anticodon Anticodon binding domain CL0094 [poplar] [flax] Peptidase_ME PF07973 [poplar] [flax] tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain
Representative CDS sequence Show only first row Show all	>Potri.010G096500.2 pacid=42799778 polypeptide=Potri.010G096500.2.p locus=Potri.010G096500 ID=Potri.010G096500.2.v4.1 annot-version=v4.1 ATGTTTTCGGACAATAATTTCAAGGTTGAAATCATCAATGATCTGCCCCCTGACAAAACAATAACTGTATACAGATGTGGCCCGTTGGTAGATTTGTGTC GTGGGCCTCATATACCAAACACATCCTTTGTGAAAGCACTTGCATGTTTGAAGGCTTCATCGGCTTATTGGAGGGGTAATAGAGATCGTGAAAGTTTACA AAGAGTGTATGGAATTTCTTTTCCTGATAAAAAACGTTTGCAGGAGTACAAGCATTTCTTGGAAGAAGCAAAGAAGTACGACCACAGGTTGTTGGGTACT AAACAGGAACTATTCTTTTGTCATCCACTTAGTCCAGGAAGTTGGTTTTTTCTTCCGCATGGAACTCGGGTTTACAACAAACTAATGGAATTTATAAAAA ATGAGTACAGAAGAAGAGGTTATGAAGAGGTTAAGTCTCCAAATATTTATAACATGAAACTTTGGGAGACATCTGGTCATGCTGCCAATTACAAGGAGAA TATGTTTTTGCTTGAGATTGAAAAGCAAGAGTTTGGACTGAAACCAATGAATTGCCCTGGGCACTGTTTGATGTTTCAACATAGAGTTCGTTCATATAGA GAACTTCCTCTTCGATTTGCTGATTTTGGGGTCTTGCATCGTAATGAAGCCAGCGGTGCACTCACTGGACTAACACGTGTTCGAAGATTTCAGCAGGATG ATGCTCACATATTCTGCAGGAAATCCCAGATAAAAGCTGAAGTCAGACGTGTCTTAGAATTCATTGATTATGCCTATGGAAAATTCGGATTCACTTATGA GCTGAAGCTATCTACTAGGCCAGAGAAATACCTAGGAGCCTTGGAAACATGGGAGGAAGCTGAGAAAGATCTCGCGGAAGCATTGAACGAGTTTGGAAAG CCGTGGAAGTTTAATGAAGGTGATGGTGCATTTTATGGACCAAAGATAGATATCAGTGTATCTGATGCATTGAAGAGGAAATTTCAGTGTGCTACATTGC AGCTTGACTTCCAGCTTCCAGATCGTTTTAAGTTGGAATATTCAGCAGAGGATGAAGCCAAGAGTGAAACACCTGTTATGATACACAGAGCGATCCTAGG TTCTGTTGAGCGTATGTTTGCTATACTATTAGAGCATTACAAGGGGAAGTGGCCCTTTTGGCTTAGTCCTCGTCAAGCAATTGTCTGCCCTGTGTCTGAG AAATCTCAGTCTTATGCATTACAGGTGCAGGATCAGATTCATGAAGCTGGCTATTTTGTTGATGCGGACACAACTGACAGAAAGATCCAGAAAAAGGTAC GAGAAGCTCAGTTGGCACAGTACAATTATATACTGGTTGTGGGTGAAGAGGAAGCCAAAACTGGACAGGTGAGTGTGCGGATGAGAGATAACGCTGACCA TTCAGTGATGAGTATTGAGAGCCTACTCAAACTCTTCAAGGATGCAGTTGCAGATTTCCGCTAG
AA sequence Show only first row Show all	>Potri.010G096500.2 pacid=42799778 polypeptide=Potri.010G096500.2.p locus=Potri.010G096500 ID=Potri.010G096500.2.v4.1 annot-version=v4.1 MFSDNNFKVEIINDLPPDKTITVYRCGPLVDLCRGPHIPNTSFVKALACLKASSAYWRGNRDRESLQRVYGISFPDKKRLQEYKHFLEEAKKYDHRLLGT KQELFFCHPLSPGSWFFLPHGTRVYNKLMEFIKNEYRRRGYEEVKSPNIYNMKLWETSGHAANYKENMFLLEIEKQEFGLKPMNCPGHCLMFQHRVRSYR ELPLRFADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRKSQIKAEVRRVLEFIDYAYGKFGFTYELKLSTRPEKYLGALETWEEAEKDLAEALNEFGK PWKFNEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFKLEYSAEDEAKSETPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSE KSQSYALQVQDQIHEAGYFVDADTTDRKIQKKVREAQLAQYNYILVVGEEEAKTGQVSVRMRDNADHSVMSIESLLKLFKDAVADFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G26830			Threonyl-tRNA synthetase (.1)		Potri.010G096500 [exp]	0	1	Pt-THRRS.2
AT5G53860		EMB64, EMB2737	EMBRYO DEFECTIVE 64, embryo de...		Potri.001G398900 [exp]	1.00	0.9578
AT1G05910			cell division cycle protein 48...		Potri.017G031400 [exp]	2.00	0.9357
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Potri.008G075300 [exp]	3.87	0.9274
AT1G16170			unknown protein		Potri.001G040300 [exp]	5.19	0.9345
AT1G51740		ATSYP81, SYP81,...	ORTHOLOG OF YEAST UFE1 \(UNKNO...		Potri.008G063100 [exp]	7.21	0.8968	SYP81.1
AT3G61540			alpha/beta-Hydrolases superfam...		Potri.002G164700 [exp]	7.61	0.8767
AT1G80350		FTR, FRC2, FRA2...	KATANIN 1, FAT ROOT, FURCA2, F...		Potri.017G013601 [exp]	9.16	0.9227
AT3G13845			unknown protein		Potri.001G196150 [exp]	9.48	0.9125
AT1G47550		SEC3A	exocyst complex component sec3...		Potri.002G131400 [exp]	10.24	0.8911
AT4G19350		EMB3006	embryo defective 3006 (.1)		Potri.004G235300 [exp]	10.24	0.9008

Compare expression of checked genes

Potri.010G096500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.