Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17960 218 / 3e-69 Threonyl-tRNA synthetase (.1) AT5G26830 224 / 5e-69 Threonyl-tRNA synthetase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G145600 [exp] 285 / 2e-92 AT5G26830 1100 / 0.0 Threonyl-tRNA synthetase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021402 [exp] 236 / 1e-73 AT5G26830 1093 / 0.0 Threonyl-tRNA synthetase (.1) Lus10005351 [exp] 232 / 2e-72 AT5G26830 1088 / 0.0 Threonyl-tRNA synthetase (.1) Lus10030841 [exp] 211 / 2e-64 AT5G26830 1007 / 0.0 Threonyl-tRNA synthetase (.1) Lus10030645 [exp] 169 / 2e-48 AT5G26830 946 / 0.0 Threonyl-tRNA synthetase (.1) Lus10030642 [exp] 82 / 4e-20 AT1G17960 79 / 9e-19 Threonyl-tRNA synthetase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF02824 [poplar] [flax] TGS TGS domain
Representative CDS sequence Show only first row Show all	>Potri.010G096550.2 pacid=42796810 polypeptide=Potri.010G096550.2.p locus=Potri.010G096550 ID=Potri.010G096550.2.v4.1 annot-version=v4.1 ATGTCCTCGGCTGCTCTCTCCTCTCCGCCGTTTCTCGCCCTCCTCATCTCTCCTTCTTGCCAAACCTCCTCCCCGTCTCCTCTCCTCTCCTCCTTCCCCT CCTCCACGACAATGGCTGCCTCCAACTCTCACCAAAAAGACGAAGGCTATCTCAATACAGTAATCCCCAAACGCATCCAACTCTTCCAATCCATTCAGTC TGAACAACTCTCCCGCATCCAATCCCTCCCTCACGACTCCATCAAGATTACTTTGCCTGACGGGACAGTGAAGGAAGGAAAGAGATGGCACTCGTCTCCC ATGGATATCGCGAAGGAGATTGGGAAGAGTGTGGCTGCGAATGCGTTAATTTCTCAAGTCAATGGAGTGTTGTGGGACATGAATAGGCCTTTAGAGGATG ACTGTGAGCTCAAGATTTTTAATTTTGAAAGTGACGAAGGACGCGACACCTTTTGGCATTCAAGTGCTCACATTCTCGGCCAGGCACTTGAAATGGAGTA TGGTTGCAAACTTTGCATTGGACCCTGTACCACAAGAGGAGAGGTTGGATGTATTCATATACTTTACAATTCAAGTGTTCCCCTATCTGTTTACCTCTTT GGTATGATTCCCGGTTCATTTATACGTATCTCTGTAATGTCGTTTATGTTATAA
AA sequence Show only first row Show all	>Potri.010G096550.2 pacid=42796810 polypeptide=Potri.010G096550.2.p locus=Potri.010G096550 ID=Potri.010G096550.2.v4.1 annot-version=v4.1 MSSAALSSPPFLALLISPSCQTSSPSPLLSSFPSSTTMAASNSHQKDEGYLNTVIPKRIQLFQSIQSEQLSRIQSLPHDSIKITLPDGTVKEGKRWHSSP MDIAKEIGKSVAANALISQVNGVLWDMNRPLEDDCELKIFNFESDEGRDTFWHSSAHILGQALEMEYGCKLCIGPCTTRGEVGCIHILYNSSVPLSVYLF GMIPGSFIRISVMSFML

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17960			Threonyl-tRNA synthetase (.1)		Potri.010G096550 [exp]	0	1
AT5G26980		ATSYP41, ATTLG2...	syntaxin of plants 41 (.1.2)		Potri.002G200400 [exp]	3.46	0.8709	SYP42.1
AT1G79210			N-terminal nucleophile aminohy...		Potri.012G123100 [exp]	3.74	0.8774
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Potri.014G151400 [exp]	7.41	0.8718
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Potri.011G059101 [exp]	8.48	0.8743
AT1G05410			Protein of unknown function (D...		Potri.010G086600 [exp]	14.14	0.8050
AT1G08390			unknown protein		Potri.002G256001 [exp]	17.43	0.8135
AT1G10930		ATSGS1, RECQL4A...	DNA helicase (RECQl4A) (.1)		Potri.003G015800 [exp]	20.39	0.8765
AT4G21530		APC4	anaphase promoting complex 4, ...		Potri.004G034900 [exp]	28.53	0.8365
AT3G20630		PER1, ATUBP14, ...	TITAN6, phosphate deficiency r...		Potri.001G408800 [exp]	30.39	0.8327	Pt-UBP14.2
AT2G39090		APC7, AtAPC7	anaphase-promoting complex 7, ...		Potri.008G215100 [exp]	36.12	0.8100

Compare expression of checked genes

Potri.010G096550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.