Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21200 362 / 6e-125 ATGA2OX8 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) AT1G50960 276 / 4e-91 ATGA2OX7 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 7, gibberellin 2-oxidase 7 (.1) AT4G10490 164 / 9e-48 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G58660 162 / 7e-47 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G05600 162 / 8e-47 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 158 / 1e-44 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G51810 154 / 1e-43 AT2353, GA20OX2, ATGA20OX2 gibberellin 20 oxidase 2 (.1) AT2G38240 153 / 2e-43 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10500 152 / 3e-43 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G19010 150 / 2e-42 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G145300 [exp] 640 / 0 AT4G21200 354 / 1e-121 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.004G022800 [exp] 382 / 2e-132 AT4G21200 441 / 7e-156 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.011G026700 [exp] 375 / 4e-130 AT4G21200 444 / 1e-157 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.001G418200 [exp] 338 / 1e-115 AT4G21200 369 / 8e-128 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.011G134000 [exp] 319 / 3e-108 AT4G21200 340 / 1e-116 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.011G134100 [exp] 315 / 2e-106 AT4G21200 324 / 2e-110 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.001G278200 [exp] 212 / 4e-66 AT5G58660 312 / 2e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.016G117100 [exp] 166 / 4e-48 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451900 [exp] 163 / 3e-47 AT4G10490 498 / 3e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029081 [exp] 522 / 0 AT4G21200 365 / 3e-126 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10030567 [exp] 521 / 0 AT4G21200 370 / 2e-128 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10012912 [exp] 519 / 0 AT4G21200 368 / 2e-127 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10013069 [exp] 499 / 3e-178 AT4G21200 366 / 5e-126 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10007640 [exp] 365 / 5e-126 AT4G21200 429 / 1e-151 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10018372 [exp] 352 / 7e-121 AT4G21200 419 / 2e-147 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10006759 [exp] 350 / 7e-120 AT4G21200 419 / 2e-147 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10030934 [exp] 170 / 1e-49 AT1G17020 337 / 2e-114 senescence-related gene 1 (.1) Lus10004808 [exp] 167 / 1e-48 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10040112 [exp] 167 / 2e-48 AT1G17020 332 / 1e-112 senescence-related gene 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.010G096800.1 pacid=42797440 polypeptide=Potri.010G096800.1.p locus=Potri.010G096800 ID=Potri.010G096800.1.v4.1 annot-version=v4.1 ATGCACGATCTTACAAGCCAACCAATAATGATGATTGATTCAAGCCCACCTCTTCTACACCATTATGGAGAGCTTACACGCCTCCCACCCCAAATTCCTA CACTTGAATGCAATGACCTCCCAAGTGGTGCTGTTGTCATGAAGGAATATTGCCAACTCCCATTGATAGACCTCAGTTGTCTAAATAGCACCATTGAAAG GGAACGGCTAGCTTGTGCTGAGGCTATATGCAGAGCTTCGTCGGAGTGGGGATTCTTCCAAGTAGTGAACCACGGTATAAGCCCCGAGCTAGTTCGGAAT ATGAGGAGGGAACAAGTGGAGTTGTTTCAAACACCTTTTGATAAGAAGGCTACTTGTGGGGTTTTGAACAACTCTTATAGATGGGGAACCCCAACAGCTA CTTGTCCAAGGCAATTCTCTTGGTCTGAAGCTTTCCACATTCCTCTCTCAAGAGTTTCTGAGCAAGCTTGCTATGGGGAGTTTAGCTCTTTAAGGGAAGT GATGATGGAATTTGCAGCAGCAATGTCAAAGCTAGCAAGGGTGCTGGCAGGGGTCCTAGCAGAAAATCTAGGCCACCCAAGAGGAGTGTTTGAAAACATT TGTCAAGAAATTAATTGCTTTCTTCGGTTGAATCGCTACCCAGCCTGCCCAATATCCTCAGAGATTTTTGGCTTAGTGCCCCACACTGATAGCGATTTTC TAACAATCCTTTCTCAAGATGAAGTTGGAGGGCTGCAACTTATGAAAGATTCCAAATGGGTGGCTGTAAATCCGAATCAAGATGCTCTTATCGTCAACAT TGGAGATCTTTTCCAGGCATGGAGCAATGATGTCTACAAGAGCGTGGAGCATAAAGTCGTGGCTAATGGAAAAATGGAGAGATATTCAATCGCCTACTTT CTGTGCCCCTCTTATGACTCATTGATAGGCAGCTGCATGGAGCCTTCTATATACAGAGAATTCACTTTCGGAGAGTATAGGAGCCAAGTCCAAGAAGACG TCAAAAGAACGGGCCGTAAGATAGGCCTTCCAAGATTTCTACTTTAA
AA sequence Show only first row Show all	>Potri.010G096800.1 pacid=42797440 polypeptide=Potri.010G096800.1.p locus=Potri.010G096800 ID=Potri.010G096800.1.v4.1 annot-version=v4.1 MHDLTSQPIMMIDSSPPLLHHYGELTRLPPQIPTLECNDLPSGAVVMKEYCQLPLIDLSCLNSTIERERLACAEAICRASSEWGFFQVVNHGISPELVRN MRREQVELFQTPFDKKATCGVLNNSYRWGTPTATCPRQFSWSEAFHIPLSRVSEQACYGEFSSLREVMMEFAAAMSKLARVLAGVLAENLGHPRGVFENI CQEINCFLRLNRYPACPISSEIFGLVPHTDSDFLTILSQDEVGGLQLMKDSKWVAVNPNQDALIVNIGDLFQAWSNDVYKSVEHKVVANGKMERYSIAYF LCPSYDSLIGSCMEPSIYREFTFGEYRSQVQEDVKRTGRKIGLPRFLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Potri.010G096800 [exp]	0	1
AT2G30090			Acyl-CoA N-acyltransferases (N...		Potri.001G279400 [exp]	7.48	0.7249
AT1G72180			Leucine-rich receptor-like pro...		Potri.019G078400 [exp]	12.84	0.6719
AT2G32660		AtRLP22	receptor like protein 22 (.1)		Potri.001G437600 [exp]	16.73	0.6626
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Potri.015G105300 [exp]	16.79	0.6677	Pt-ARF2.1
AT5G24600			Protein of unknown function, D...		Potri.015G001300 [exp]	18.22	0.6846
AT3G47570			Leucine-rich repeat protein ki...		Potri.010G228200 [exp]	21.33	0.6379
AT4G25700		BCH1, B1, CHY1,...	BETA CAROTENOID HYDROXYLASE 1,...		Potri.017G145700 [exp]	21.77	0.6926
AT1G46768	AP2_ERF	RAP2.1	related to AP2 1 (.1)		Potri.002G124000 [exp]	22.80	0.6255	Pt-DREB1.3,DREB35
AT5G24600			Protein of unknown function, D...		Potri.015G001500 [exp]	25.21	0.6563
AT2G32660		AtRLP22	receptor like protein 22 (.1)		Potri.001G437800 [exp]	30.24	0.6358

Compare expression of checked genes

Potri.010G096800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.