Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60670 242 / 1e-79 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) AT1G10820 236 / 2e-77 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) AT3G07565 187 / 4e-58 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) AT1G68160 159 / 5e-47 Protein of unknown function (DUF3755) (.1) AT2G43470 77 / 2e-16 Protein of unknown function (DUF3755) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G145100 [exp] 521 / 0 AT1G60670 251 / 4e-83 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) Potri.014G197300 [exp] 175 / 4e-53 AT3G07565 330 / 7e-115 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Potri.017G023300 [exp] 166 / 8e-50 AT3G07565 264 / 3e-89 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Potri.007G132700 [exp] 162 / 1e-48 AT3G07565 265 / 1e-89 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013072 [exp] 349 / 7e-121 AT1G60670 250 / 6e-83 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) Lus10030566 [exp] 338 / 1e-116 AT1G60670 239 / 1e-78 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) Lus10029076 [exp] 330 / 1e-113 AT1G10820 245 / 3e-81 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) Lus10012911 [exp] 330 / 2e-112 AT1G60670 228 / 2e-73 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2) Lus10027045 [exp] 126 / 2e-32 AT2G43400 228 / 1e-71 electron-transfer flavoprotein:ubiquinone oxidoreductase (.1) Lus10025582 [exp] 87 / 2e-20 AT3G07565 160 / 3e-50 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Lus10025581 [exp] 85 / 1e-18 AT3G07565 155 / 2e-46 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4) Lus10027044 [exp] 53 / 2e-08 AT3G07565 116 / 2e-33 Protein of unknown function (DUF3755) (.1), Protein of unknown function (DUF3755) (.2), Protein of unknown function (DUF3755) (.3), Protein of unknown function (DUF3755) (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12579 [poplar] [flax] DUF3755 Protein of unknown function (DUF3755)
Representative CDS sequence Show only first row Show all	>Potri.010G097000.2 pacid=42800231 polypeptide=Potri.010G097000.2.p locus=Potri.010G097000 ID=Potri.010G097000.2.v4.1 annot-version=v4.1 ATGGCAGCAGAGTCTAACACAGGGTTTCACCGAGAGGGAATCTTACCTTCTGCACTTAATCGGCACGCAATTTCGTTTCAATCAGGCGCTATAAATAGCG GCTGCACAACGGATATGGTTCCCATTGGGATGGGGTCTTACTTTGGGATCAATACCAGTACTAGTAGTAGCTTGATGTTGCCTGGGAGTTTCGGCTTGAT TGGTAATAATAACAGTCCTGGTGGTAGTGGAAGTGGTGGAATTATTCAAGCTCAAGCTGGAAATTCTTCTGCCTCATCTTCGTCACTTCTTGATTCCGTT CCTGGCTTAAAGCATGACGCTGGCTTGGCTGTTGAGTGGTCCGTTGAGGAGCAGTATAAACTCGAGGAAGGCCTTCACAAATATGCCGATGAACCAACTA TTCTGAGATACATAAAGATTGCAGCCATGCTCCGTGATAAAACTGTTCGTGATGTTGCGTTAAGGTGTAGGTGGATGATGAGAAAGAGAAGGAAAGCAGA AGATTATAACATGGGAAAGATGATCAACAACAGGAAGGATAAGCTGGTGGAATCATCCTCGAAGATGAACATGGCTGCAGCTTTACCGCAGAACATGGCT GCTTATCCTCTAATGATGCACCATATGGACCAAAGTGAACCTTTGCCTTTTGAAGGAATTAGTGGGATGGCTAGACTCTTGGACCAGAATGCCCAGGCTT TTAGTCAGATCTCAGCGAACCTTTCCATATTCAAGTTGCAGGATAACATTGACCTCCTTTGTCACACAAGGAACAACATCACTGCCATCCTGAATGATAT GAGAGAGATGCCTGGAATGAGTCAGATGCCACCACTACCTGTGTCCATTAACGAGGATCTTGCAAATAGTATATTGCCCAATACAGTTCAGTCAATGATG TTTGGCTCGCCCTCTGGAATCCAACGGAAGCAGGAGCCAAGGTGCTGA
AA sequence Show only first row Show all	>Potri.010G097000.2 pacid=42800231 polypeptide=Potri.010G097000.2.p locus=Potri.010G097000 ID=Potri.010G097000.2.v4.1 annot-version=v4.1 MAAESNTGFHREGILPSALNRHAISFQSGAINSGCTTDMVPIGMGSYFGINTSTSSSLMLPGSFGLIGNNNSPGGSGSGGIIQAQAGNSSASSSSLLDSV PGLKHDAGLAVEWSVEEQYKLEEGLHKYADEPTILRYIKIAAMLRDKTVRDVALRCRWMMRKRRKAEDYNMGKMINNRKDKLVESSSKMNMAAALPQNMA AYPLMMHHMDQSEPLPFEGISGMARLLDQNAQAFSQISANLSIFKLQDNIDLLCHTRNNITAILNDMREMPGMSQMPPLPVSINEDLANSILPNTVQSMM FGSPSGIQRKQEPRC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60670			Protein of unknown function (D...		Potri.010G097000 [exp]	0	1
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Potri.008G138000 [exp]	5.47	0.8034
AT1G06230		GTE4	global transcription factor gr...		Potri.001G376400 [exp]	5.56	0.8570	GTE910
AT1G61660	bHLH	bHLH112	basic helix-loop-helix (bHLH) ...		Potri.011G033000 [exp]	6.00	0.8385
AT1G09530	bHLH	PIF3, POC1, PAP...	PHOTOCURRENT 1, PHYTOCHROME-AS...		Potri.013G001300 [exp]	8.00	0.7820
AT4G26455		WIP1	WPP domain interacting protein...		Potri.001G472000 [exp]	9.48	0.7833
AT3G26932		DRB3	dsRNA-binding protein 3 (.1.2)		Potri.005G045700 [exp]	9.74	0.8123
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Potri.008G049900 [exp]	9.89	0.8089	Pt-MKP1.2
AT3G59910			Ankyrin repeat family protein ...		Potri.007G146500 [exp]	14.69	0.8065
AT5G09540			Chaperone DnaJ-domain superfam...		Potri.007G114800 [exp]	17.32	0.7683
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Potri.009G052900 [exp]	17.86	0.8015	HAP2.5

Compare expression of checked genes

Potri.010G097000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.