Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10850 806 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G60630 504 / 1e-171 Leucine-rich repeat protein kinase family protein (.1) AT5G43020 358 / 9e-115 Leucine-rich repeat protein kinase family protein (.1) AT1G48480 324 / 1e-101 RKL1 receptor-like kinase 1 (.1) AT5G58300 320 / 6e-100 Leucine-rich repeat protein kinase family protein (.1.2) AT3G17840 317 / 5e-99 RLK902 receptor-like kinase 902 (.1) AT3G08680 312 / 4e-97 Leucine-rich repeat protein kinase family protein (.1.2) AT5G16590 309 / 3e-96 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) AT4G31250 290 / 2e-88 Leucine-rich repeat protein kinase family protein (.1) AT5G67200 285 / 8e-87 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G144900 [exp] 1093 / 0 AT1G10850 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G158800 [exp] 349 / 2e-111 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G131500 [exp] 347 / 8e-111 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.015G035500 [exp] 336 / 3e-106 AT1G48480 731 / 0.0 receptor-like kinase 1 (.1) Potri.004G086100 [exp] 334 / 5e-106 AT5G16590 655 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.016G139200 [exp] 334 / 1e-105 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G062100 [exp] 331 / 9e-104 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.015G023500 [exp] 307 / 2e-95 AT4G23740 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G033200 [exp] 305 / 1e-94 AT4G23740 656 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029075 [exp] 879 / 0 AT1G10850 825 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10013073 [exp] 867 / 0 AT1G10850 820 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035012 [exp] 353 / 1e-112 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021673 [exp] 348 / 8e-111 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10019113 [exp] 338 / 5e-107 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034446 [exp] 334 / 1e-105 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10024803 [exp] 285 / 1e-86 AT5G43020 678 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038828 [exp] 274 / 1e-82 AT4G23740 613 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10036426 [exp] 271 / 1e-81 AT5G67200 765 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10039321 [exp] 270 / 3e-81 AT4G23740 649 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.010G097200.1 pacid=42798311 polypeptide=Potri.010G097200.1.p locus=Potri.010G097200 ID=Potri.010G097200.1.v4.1 annot-version=v4.1 ATGGAACCTCTGGTTTCAAGGTACCCTTTTCTCTTCTCATTGTTATACTTCACTGTTGTTTCTCTTCTTTGTCCAGTTAGATCAGGCGATGCTGAGGCCC TGTTAACCCTCAAATCAGCCATTGATCCTTTAAACTTCCTCCCATGGCAACATGGAACCAATGTGTGCAAATGGCAAGGTGTCAAAGAATGCAAGAATGG AAGGGTCACAAAGCTTGTTGTAGAGTACCAAAACCAGAGTGGTACTCTGGATGCCAAAATCTTGAATCAACTAGACCAACTTCGAGTCTTGAGTTTCAAA GGGAACTCACTTTCAGGCCAAATCCCAAATCTTTCTGGCCTTGTCAATCTCAAATCTCTCTTCCTCGACAGCAACAACTTCTCCGGTGATTTCCCAGATT CCATTACAGGCCTACACCGTTTAAAAGTCATAGTTTTAGCTCGAAACCAAATCTCTGGTCCAATCCCAGTGTCAATCCTCAACCTCAGTCGTTTGTATGC TCTTTACTTAGAAGATAATAACTTCACTGGATCAATTCCTCCTTTGAACCAAACCAGTCTAAGATTCTTCAATGTGTCTAACAATAAACTCTCTGGTCAA ATTCCCGTGACCCCACCATTGATTAGGTTCAATACACCCTCTTTCATTGGCAATCTCAATCTTTGTGGTGTACAGATTCAGAACCCTTGCAACAATCTAA ATTTCGGACCATCTTTAAGTCCAACCTATCCATCTTCAAAACCAACGTCCAAACGTAGCAAGACAATCAAGATTGTAGCAGCAACTGCCGGTGGGTTTGT GTTTCTTATAACTTGTCTGCTTTTGGTATGCTGTTTTTGTTTCAAGAATGGCAACAAGAAAGAAGGGCCATCAATGGTAGAAGAGAGAAACAAAGGGGTT GTCGGGGTTGAAAGGGGAGGAGAAGCATCAGGAGGTGTAGGTGGCATGGATGGTAATAATGGTGGAAGACAAGGGGGGTTTTCGTGGGAGAGTGAGGGTT TAGGGAGTTTGGTGTTCTTGGGTGCAGGGGATCAGCAGATGAGTTACAGCTTGGAGGATTTATTGAAGGCGTCAGCTGAGACTTTGGGGAGGGGTACTAT AGGGAGTACCTACAAAGCTGTGATGGAGTCTGGGTTCATCGTGACCGTTAAAAGGTTAAAAGATGCAAGATATCCCAGGCTCGAGGAGTTTAGGAGACAC ATGGACTTGCTTGGTAGGCTAAGGCATCCCAGCTTAGTCCCACTCAGAGCTTATTTCCAGGCCAAGGAGGAAAGGCTAATTGTATATGATTATTTCCCCA ACGGCAGTCTCTTTTCTCTCCTCCACGGAACTAGAACTTCAGGCGGTGGGAAGCCACTTCACTGGACTTCGTGTCTCAAAATAGCTGAGGACTTGGCAAC TGGACTACTCTATATCCACCAGAACCCTGGGTTAACCCATGGGAATTTGAAATCCTCCAATGTCCTCTTAGGCCCTGAATTTGAGTCCTGCCTTACTGAC TATGGTCTGACCATGTTCCAAAATCCAGACTCACTGGAGGAACCCAGTGCCACTTCTCTGTTCTACAGAGCCCCCGAGATCCGAGACGTACGAAAACCAT CCACCCAACCAGCTGATGTATACAGCTTTGGCGTACTCCTATTGGAACTTCTTACTGGCAAGACTCCCTTCCAGGACCTTGTTCAAGAGCATGGTCCAGA TATTCCTAGGTGGGTTCGGTCAGTACGCGAGGAAGAGACCGAGTCCGGAGATGACCCTGCCTCGGGTAATGAGGCAGCGGAGGAGAAACTCCAGGCTCTT GTAAACATTGCAATGGCTTGTGTCTCACTCACACCAGATAACCGGCCGTCAATGAGGGACGTCTTTAGGATGATCAGAGATGCAAGGGCAGAGGCTCGAG TTTCATCTAATAGCAGTGACCATTCACCTGGAAGATGGTCAGATACCGTTCAGAGCTTGCCTAGAGAAGAACATTTGAGCATTTGA
AA sequence Show only first row Show all	>Potri.010G097200.1 pacid=42798311 polypeptide=Potri.010G097200.1.p locus=Potri.010G097200 ID=Potri.010G097200.1.v4.1 annot-version=v4.1 MEPLVSRYPFLFSLLYFTVVSLLCPVRSGDAEALLTLKSAIDPLNFLPWQHGTNVCKWQGVKECKNGRVTKLVVEYQNQSGTLDAKILNQLDQLRVLSFK GNSLSGQIPNLSGLVNLKSLFLDSNNFSGDFPDSITGLHRLKVIVLARNQISGPIPVSILNLSRLYALYLEDNNFTGSIPPLNQTSLRFFNVSNNKLSGQ IPVTPPLIRFNTPSFIGNLNLCGVQIQNPCNNLNFGPSLSPTYPSSKPTSKRSKTIKIVAATAGGFVFLITCLLLVCCFCFKNGNKKEGPSMVEERNKGV VGVERGGEASGGVGGMDGNNGGRQGGFSWESEGLGSLVFLGAGDQQMSYSLEDLLKASAETLGRGTIGSTYKAVMESGFIVTVKRLKDARYPRLEEFRRH MDLLGRLRHPSLVPLRAYFQAKEERLIVYDYFPNGSLFSLLHGTRTSGGGKPLHWTSCLKIAEDLATGLLYIHQNPGLTHGNLKSSNVLLGPEFESCLTD YGLTMFQNPDSLEEPSATSLFYRAPEIRDVRKPSTQPADVYSFGVLLLELLTGKTPFQDLVQEHGPDIPRWVRSVREEETESGDDPASGNEAAEEKLQAL VNIAMACVSLTPDNRPSMRDVFRMIRDARAEARVSSNSSDHSPGRWSDTVQSLPREEHLSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10850			Leucine-rich repeat protein ki...		Potri.010G097200 [exp]	0	1
AT4G23820			Pectin lyase-like superfamily ...		Potri.003G139100 [exp]	3.74	0.8542
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Potri.010G167200 [exp]	7.48	0.7850	EXPA1.1,PtEXPA3
AT1G63850			BTB/POZ domain-containing prot...		Potri.001G100900 [exp]	8.48	0.8175
AT4G03110		AtRBP-DR1	RNA-binding protein-defense re...		Potri.002G214000 [exp]	9.48	0.7832
AT3G62390		TBL6	TRICHOME BIREFRINGENCE-LIKE 6 ...		Potri.002G195800 [exp]	11.66	0.7778
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Potri.006G116900 [exp]	12.60	0.8310
AT3G08030			Protein of unknown function, D...		Potri.001G263900 [exp]	13.74	0.8131
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Potri.003G142000 [exp]	15.09	0.8247
AT5G11300		CYC2BAT, CYCA2;...	CYCLIN A2;2, mitotic-like cycl...		Potri.006G247200 [exp]	17.32	0.7975
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.004G084000 [exp]	18.02	0.7865

Compare expression of checked genes

Potri.010G097200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.