Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02820 214 / 2e-68 zinc knuckle (CCHC-type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012910 [exp] 230 / 2e-74 AT3G02820 253 / 9e-84 zinc knuckle (CCHC-type) family protein (.1) Lus10030564 [exp] 220 / 2e-70 AT3G02820 240 / 3e-78 zinc knuckle (CCHC-type) family protein (.1) Lus10000128 [exp] 43 / 8e-05 AT5G04280 144 / 2e-42 AtRZ-1c, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) Lus10038683 [exp] 43 / 0.0001 AT5G04280 179 / 8e-55 AtRZ-1c, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) Lus10037950 [exp] 43 / 0.0001 AT5G04280 186 / 7e-57 AtRZ-1c, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0511 [poplar] [flax] Retroviral_zf PF00098 [poplar] [flax] zf-CCHC Zinc knuckle CL0511 [poplar] [flax] PF07962 [poplar] [flax] Swi3 Replication Fork Protection Component Swi3
Representative CDS sequence Show only first row Show all	>Potri.010G097400.1 pacid=42799360 polypeptide=Potri.010G097400.1.p locus=Potri.010G097400 ID=Potri.010G097400.1.v4.1 annot-version=v4.1 ATGGAGAAGACAAACGCAGCACCGACTGGTTGTTACAAGTGTGGACGTCCAGGCCACTGGTCCCGTGACTGCCCTGATTCAAACCCTAACCCTAACCCTA ACCCTAGCTCCAATCCCAATTCTCCCAGATCTTTCCCTTCTAATAACAATAGCAGCAGCAATAACAGTAATTATTTCAGTGGTAGCAACTCAAAACCGGC AAAAGCAGCAGAGAAACCGAAGAAAGTGCCAAGAAGTAGGCCAAAGCTCACACCCGAGCTTCTACTCGGGGAAGATAATGGGCTTGGCTTCATTCTTCGC CACTTTCCTCGCAACTTCAAGTATCGTGGCCGCGGGCACGAGGTCAGTGATCTGGGAAACTTGATCGGTTTATACAGTGAATGGCACTCTCATTTGCTCC CTTATTATTCATTTGATCAATTTGTACATAAGGTGGAGCAAGTTGCCGCTACGAAACGTGCTAAGATGTGTGTTCGAGAATTGAGAGAGAGAGTTGCCAG TGGAGGGGATCCAACAAAGTTGCGTGAATCCTTAACTGAACATGTCAGTGCAAATGTTGAGCATGATCTATCTACACCTGATGAAGGCTTGAACTCTGAG GTAACTCATAATGAGGAAGATCCACTTTCAAAGAACCAAGATGTGGATGGTTTACCAGAAGACATGCTTCATGAGGTTTATGATAGGGCTACTGAAGAAC CAACTCAGACCTTGGACAGGAGGGACATGGAATTACCAAATGAAATTAATGGAGCTAGCTGCTCCAATGAAGTTTCGATCTCGGAAGAACAGAAAGCTCG CATGGAAGCTAACAGGTTGAGGGCACTAGAAAGAGCTGCAGCTCGGGCTCAGTCATAG
AA sequence Show only first row Show all	>Potri.010G097400.1 pacid=42799360 polypeptide=Potri.010G097400.1.p locus=Potri.010G097400 ID=Potri.010G097400.1.v4.1 annot-version=v4.1 MEKTNAAPTGCYKCGRPGHWSRDCPDSNPNPNPNPSSNPNSPRSFPSNNNSSSNNSNYFSGSNSKPAKAAEKPKKVPRSRPKLTPELLLGEDNGLGFILR HFPRNFKYRGRGHEVSDLGNLIGLYSEWHSHLLPYYSFDQFVHKVEQVAATKRAKMCVRELRERVASGGDPTKLRESLTEHVSANVEHDLSTPDEGLNSE VTHNEEDPLSKNQDVDGLPEDMLHEVYDRATEEPTQTLDRRDMELPNEINGASCSNEVSISEEQKARMEANRLRALERAAARAQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02820			zinc knuckle (CCHC-type) famil...		Potri.010G097400 [exp]	0	1
AT3G05740		RECQI1	RECQ helicase l1 (.1)		Potri.005G019800 [exp]	1.73	0.7734
AT1G14900		HMGA	high mobility group A (.1)		Potri.010G109600 [exp]	4.00	0.8053
AT4G15770			RNA binding (.1)		Potri.010G024400 [exp]	8.06	0.7440
AT4G29170		ATMND1	Mnd1 family protein (.1.2)		Potri.018G069800 [exp]	10.09	0.7330
AT3G17030			Nucleic acid-binding proteins ...		Potri.010G144400 [exp]	10.77	0.7515
AT2G14660			unknown protein		Potri.009G085700 [exp]	11.95	0.7006
AT5G65360			Histone superfamily protein (....		Potri.005G233900 [exp]	14.28	0.7813
AT5G20180			Ribosomal protein L36 (.1.2)		Potri.006G069000 [exp]	15.81	0.6639
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Potri.008G042400 [exp]	15.87	0.6837	ATS9.3
AT1G04190		TPR3	tetratricopeptide repeat 3, Te...		Potri.010G082900 [exp]	16.09	0.7268

Compare expression of checked genes

Potri.010G097400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.