Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11920 708 / 0 glutaredoxin-related (.1) AT4G08550 278 / 1e-83 electron carriers;protein disulfide oxidoreductases (.1) AT2G23700 109 / 1e-24 Protein of unknown function, DUF547 (.1) AT5G66600 106 / 8e-24 Protein of unknown function, DUF547 (.1.2.3.4) AT3G18900 95 / 3e-20 unknown protein AT3G13000 90 / 1e-18 Protein of unknown function, DUF547 (.1.2) AT5G60720 90 / 2e-18 Protein of unknown function, DUF547 (.1) AT1G16750 89 / 3e-18 Protein of unknown function, DUF547 (.1) AT5G42690 87 / 1e-17 Protein of unknown function, DUF547 (.1.2.3) AT5G47380 85 / 8e-17 Protein of unknown function, DUF547 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G144800 [exp] 1107 / 0 AT3G11920 707 / 0.0 glutaredoxin-related (.1) Potri.002G091200 [exp] 428 / 9e-140 AT4G08550 637 / 0.0 electron carriers;protein disulfide oxidoreductases (.1) Potri.005G130000 [exp] 102 / 1e-22 AT5G66600 664 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.004G150000 [exp] 100 / 7e-22 AT5G66600 447 / 2e-150 Protein of unknown function, DUF547 (.1.2.3.4) Potri.007G033100 [exp] 97 / 7e-21 AT5G66600 721 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Potri.002G001900 [exp] 93 / 2e-19 AT1G76620 414 / 1e-139 Protein of unknown function, DUF547 (.1) Potri.009G111100 [exp] 92 / 5e-19 AT5G66600 466 / 5e-158 Protein of unknown function, DUF547 (.1.2.3.4) Potri.007G003900 [exp] 88 / 6e-18 AT3G13000 654 / 0.0 Protein of unknown function, DUF547 (.1.2) Potri.001G157200 [exp] 86 / 5e-17 AT5G47380 642 / 0.0 Protein of unknown function, DUF547 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034196 [exp] 835 / 0 AT3G11920 688 / 0.0 glutaredoxin-related (.1) Lus10029074 [exp] 828 / 0 AT3G11920 692 / 0.0 glutaredoxin-related (.1) Lus10012909 [exp] 827 / 0 AT3G11920 659 / 0.0 glutaredoxin-related (.1) Lus10030563 [exp] 769 / 0 AT3G11920 583 / 0.0 glutaredoxin-related (.1) Lus10016786 [exp] 96 / 3e-20 AT5G66600 666 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10022480 [exp] 93 / 2e-19 AT5G66600 662 / 0.0 Protein of unknown function, DUF547 (.1.2.3.4) Lus10033328 [exp] 89 / 4e-18 AT3G13000 712 / 0.0 Protein of unknown function, DUF547 (.1.2) Lus10007795 [exp] 85 / 1e-16 AT5G47380 562 / 0.0 Protein of unknown function, DUF547 (.1) Lus10032768 [exp] 80 / 2e-15 AT4G37080 495 / 3e-171 Protein of unknown function, DUF547 (.1.2.3) Lus10037293 [exp] 80 / 2e-15 AT3G13000 663 / 0.0 Protein of unknown function, DUF547 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF00462 [poplar] [flax] Glutaredoxin Glutaredoxin CL0123 [poplar] [flax] HTH PF00610 [poplar] [flax] DEP Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) CL0123 [poplar] [flax] PF04784 [poplar] [flax] DUF547 Protein of unknown function, DUF547
Representative CDS sequence Show only first row Show all	>Potri.010G097600.1 pacid=42799776 polypeptide=Potri.010G097600.1.p locus=Potri.010G097600 ID=Potri.010G097600.1.v4.1 annot-version=v4.1 ATGGAGTTAACAAACGGAGAACTGATCAAGGCTGATGCCCAAGAGAAATTAGGAATTAACGTAGCAGAGGCAAACGGATCAGTTGCTGATGGAAATCTCG TTAAGGGGATTATTCAAACAGGATTGGCAAAGGAGAATCTCTCCAAATCCGTCCATCCCTCTCCAAATTCAAACTCAGATTTTAACTACGATGATCCAGC TGGAGATATCAAACCTGCACAAAAGGATCAACAGGAAGACGGTTTTTGCGAAATAGAGATGGAGGAGGAGAAACAAGATTCAGCAACCGAGATATTCTCT TCAGACGATGCCGTTGAAAGAATCACATCAACCGGAAATCACGTGGAGAAAGAAGAGAATGACGATATTATAGCCGTTTCACCCAAAGTCAACGGCTATA TACAAGTAATCCAGCCTGATATTCATCTCCCAAAGCCAGAGGCACCTCCAGGTCTCTCACCTTCATCTACACCTTCCCCACAACAAAACGACGACGTTGT AACCCGATCCAAATCATTGCCTAATAGTTTCACGGTCGTCGACATGCCGTCCATCGGAAAATTCATCAAGGACAGAAGCAACAGCTTATCAGCATCGATT TCAAAAAGATTTTCCTTTTTCAAGTCCGATGACGGTGATGATTATAACATGAATCATAAGGTGAACTCATTCGACTCAGGCGTGACAAGGTTCAACATAT CGGGACTCAAAGTTACAGTGAAGCTCAAAAAGGACGACGAAGAGGAACAGATTAAAGGACGGATAAGTTTCTTTTCAAGGTCAAATTGCAGAGACTGCAC CGCAGTCCGTTCGTTTTTTAGAGAGAGAGGATTAAAGTTTGTTGAAATCAACATTGACGTGTATCGGCAAAGAGAGAAAGAGTTGATTGAGAGAACCGGA AATTCTCAGGTGCCGCAGATATTTTTCAACGAGAAATTGTTTGGTGGTTTGGTGGCTTTGAATTCGTTGAGAAACAGTGGAGGTTTTGAGCAGAGGTTGA AGGAGATGCTAGCGAAGAAATGTTCAGGGAATGCGCCGGCACCACCGGTGTATGGATTTGATGATCACGAGGAGGAATCAACGGACGAGATGGTTTGGAT AGTGAAGGTTTTGAGGCAGAAATTACCAATTCAGGATCGTCTGATGAAGATGAAGATTGTTAAGAACTGTTTTGCTGGGAATGAGATGGTCGAGGTGATC ATTCACCACTTCGATTGCGGCAAGAAGAAGGCTGTTGAGATTGGTAAGCAGTTGGCCAGGAAGCACTTCATTCATCATGTTTTTGGGGAAAATGATTTTG AAGATGGGAACCATTATTATCGTTTCATTGAGCATGAACCATTTATTCCCAAATGCTACAATTTTAGAGGGTCTACCAACGACAGTGAGCCTAAGCCCGC CGTTGTGGTTGGACAAAGGCTCCACAAGATAATGTCTGCAATACTAGAGTCACATGCCTCTGATGACAGGTGCCTTGTTGATTATGCCGGCATCAGCAAA AGCGAGGAATTCCGAAGATATGACAATTTGGCTCAAGATCTTCACAGGGTGGATGTCCTAAAGCTGTCACAAGATGAGAAACTGGCTTTCTTCTTGAATT TGCACAATGCCATGGTCATCCACGCTGTAATTAGAGTGGGATGTCCAGAAGGGGCAATTGATAGGAGATCCTTCTATTCCGACTTTCAATACATTGTAGG AGGATCTCCCTACTCCCTAAATACAATTAAGAATGGAATTCTCAGAAGCAACAGAAGATCTCCCTACTCATTAGTAAAGCCTTTTGGCACTGGAGACAAA CGCCTAGAGGTCGTTCTTCCTAAAGTGAATCCATTAATTCATTTCGGGCTCTGCAATGGCACAAGATCAAGCCCCTCAGTGAGGTTTTTCACACCCCAAG GAATTGAAGCTGAATTGAGATGCGCTACAAGAGAATTCTTCCAACGTAATGGAATTGAGGTGGACTTGGAAAAGAGGACAGTTTACCTTACACGGATTAT CAAGTGGTTCAGTGGTGATTTTGGGCAAGAGAAAGAAATTCTGAGGTGGATTATCAACTACTTGGACGCAACTAAAGCAGGTCTACTGACGCATCTTTTG GGAGACGGGGGCCCTGTTAACATTGTTTACCAAGATTATGATTGGTCTATCAATGCTTAA
AA sequence Show only first row Show all	>Potri.010G097600.1 pacid=42799776 polypeptide=Potri.010G097600.1.p locus=Potri.010G097600 ID=Potri.010G097600.1.v4.1 annot-version=v4.1 MELTNGELIKADAQEKLGINVAEANGSVADGNLVKGIIQTGLAKENLSKSVHPSPNSNSDFNYDDPAGDIKPAQKDQQEDGFCEIEMEEEKQDSATEIFS SDDAVERITSTGNHVEKEENDDIIAVSPKVNGYIQVIQPDIHLPKPEAPPGLSPSSTPSPQQNDDVVTRSKSLPNSFTVVDMPSIGKFIKDRSNSLSASI SKRFSFFKSDDGDDYNMNHKVNSFDSGVTRFNISGLKVTVKLKKDDEEEQIKGRISFFSRSNCRDCTAVRSFFRERGLKFVEINIDVYRQREKELIERTG NSQVPQIFFNEKLFGGLVALNSLRNSGGFEQRLKEMLAKKCSGNAPAPPVYGFDDHEEESTDEMVWIVKVLRQKLPIQDRLMKMKIVKNCFAGNEMVEVI IHHFDCGKKKAVEIGKQLARKHFIHHVFGENDFEDGNHYYRFIEHEPFIPKCYNFRGSTNDSEPKPAVVVGQRLHKIMSAILESHASDDRCLVDYAGISK SEEFRRYDNLAQDLHRVDVLKLSQDEKLAFFLNLHNAMVIHAVIRVGCPEGAIDRRSFYSDFQYIVGGSPYSLNTIKNGILRSNRRSPYSLVKPFGTGDK RLEVVLPKVNPLIHFGLCNGTRSSPSVRFFTPQGIEAELRCATREFFQRNGIEVDLEKRTVYLTRIIKWFSGDFGQEKEILRWIINYLDATKAGLLTHLL GDGGPVNIVYQDYDWSINA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11920			glutaredoxin-related (.1)		Potri.010G097600 [exp]	0	1
AT4G12410			SAUR-like auxin-responsive pro...		Potri.001G119900 [exp]	11.31	0.9286
AT5G11210		ATGLR2.5	ARABIDOPSIS THALIANA GLU, glut...		Potri.011G062900 [exp]	21.54	0.9095
					Potri.001G131600 [exp]	24.79	0.9054
AT5G27060		AtRLP53	receptor like protein 53 (.1)		Potri.011G054500 [exp]	26.30	0.8981
					Potri.017G111000 [exp]	30.69	0.8942
AT4G08850			Leucine-rich repeat receptor-l...		Potri.019G099200 [exp]	30.72	0.8205
					Potri.017G111150 [exp]	33.54	0.8964
					Potri.002G247600 [exp]	43.68	0.8856
AT1G66910			Protein kinase superfamily pro...		Potri.015G018101 [exp]	46.90	0.8882
AT1G30760			FAD-binding Berberine family p...		Potri.001G462700 [exp]	57.23	0.8852

Compare expression of checked genes

Potri.010G097600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.