Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PSKR.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02220 1187 / 0 ATPSKR1 phytosulfokin receptor 1 (.1) AT5G53890 834 / 0 AtPSKR2 phytosylfokine-alpha receptor 2 (.1) AT1G72300 762 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT1G55610 454 / 1e-141 BRL1 BRI1 like (.1.2) AT3G13380 454 / 1e-141 BRL3 BRI1-like 3 (.1) AT5G07280 449 / 1e-139 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G39400 425 / 1e-130 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT2G01950 399 / 3e-121 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT4G28650 395 / 7e-121 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G20140 397 / 4e-120 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G144700 [exp] 1630 / 0 AT2G02220 1258 / 0.0 phytosulfokin receptor 1 (.1) Potri.001G398500 [exp] 882 / 0 AT5G53890 1268 / 0.0 phytosylfokine-alpha receptor 2 (.1) Potri.011G116900 [exp] 872 / 0 AT5G53890 1279 / 0.0 phytosylfokine-alpha receptor 2 (.1) Potri.003G074000 [exp] 787 / 0 AT1G72300 1215 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G161000 [exp] 785 / 0 AT1G72300 1199 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.017G050700 [exp] 527 / 2e-175 AT2G02220 540 / 1e-180 phytosulfokin receptor 1 (.1) Potri.001G310700 [exp] 525 / 2e-174 AT2G02220 505 / 5e-167 phytosulfokin receptor 1 (.1) Potri.017G050600 [exp] 446 / 4e-144 AT2G02220 407 / 2e-129 phytosulfokin receptor 1 (.1) Potri.015G141200 [exp] 457 / 1e-141 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005403 [exp] 856 / 0 AT5G53890 1248 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10009213 [exp] 840 / 0 AT5G53890 1258 / 0.0 phytosylfokine-alpha receptor 2 (.1) Lus10016395 [exp] 778 / 0 AT1G72300 1170 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10019722 [exp] 773 / 0 AT1G72300 1189 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10033533 [exp] 452 / 1e-140 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10020835 [exp] 444 / 2e-137 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038875 [exp] 425 / 6e-130 AT5G07280 1248 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10039132 [exp] 416 / 2e-127 AT2G01950 1503 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10005784 [exp] 414 / 2e-126 AT4G39400 1361 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038726 [exp] 413 / 2e-126 AT2G01950 1501 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.010G097700.1 pacid=42798480 polypeptide=Potri.010G097700.1.p locus=Potri.010G097700 ID=Potri.010G097700.1.v4.1 annot-version=v4.1 ATGGGGGTCCAAGCTTTGTGGGTTGCGTTTCTTGTTCTTGGATTCTTGATGTTCCAAGCTCACGTCTTGCAATCACAGAACCTAGCATGCAACCAGAATG ACTTGAGGGCATTACAGGAGTTTATGAGAGGCTTACAATCACCAATTCAAGGTTGGGGTACTACCAATTCATCATCCTCTGATTGCTGCAACTGGTCAGG CATCACTTGCTACTCCTCCTCTTCACTTGGTCTAGTAAATGATTCTGTCAATTCTGGCAGAGTGACAAAATTAGAGCTTGTAAGGCAAAGACTGACTGGC AAACTTGTGGAATCAGTAGGCAGTTTGGATCAGCTTAGAACCCTCAATCTCTCCCACAATTTCCTCAAAGATTCACTGCCTTTCTCATTGTTTCACTTGC CAAAACTAGAGGTTCTAGACTTGAGTTCCAATGACTTTTCTGGCTCTATCCCACAAAGCATCAATCTTCCCTCCATCAAATTCCTTGACATTTCCTCAAA TTCTTTAAGTGGCTCGCTCCCTACACATATTTGCCAAAACTCTTCAAGAATTCAGGTTCTTGTTTTGGCTGTTAACTACTTCTCTGGTATTCTTTCACCT GGGCTAGGGAATTGCACCACCTTGGAGCACCTCTGTCTTGGAATGAATGATCTCATTGGTGGTATAAGTGAGGACATCTTTCAGCTGCAAAAACTGAAGC TTTTGGGTCTCCAAGATAACAAGCTTTCGGGGAATTTGAGTACTGGTATTGGTAAACTCCTTAGCCTTGAACGTCTAGACATTTCCTCCAATAATTTTTC GGGTACCATTCCAGATGTTTTTCGCAGCTTATCAAAGTTGAAGTTTTTCTTAGGCCATTCTAATTATTTTGTTGGTAGAATACCCATCTCCTTGGCAAAT TCTCCCTCTCTCAATCTGCTTAATTTGAGAAATAATTCATTTGGAGGCATTGTTGAACTGAATTGTTCTGCCATGACTAATTTGTCATCTCTTGATTTAG CTACTAATAGTTTTAGTGGGAATGTGCCTTCTTATCTTCCTGCTTGTAAGAATTTGAAGAATATTAATCTTGCCAAGAACAAATTCACCGGCAAAATCCC CGAAAGCTTCAAGAATTTTCAAGGCCTTTCCTACCTTTCCCTCTCAAATTGCAGCATTACCAATCTTTCATCTACCCTTCGAATCCTGCAGCAGTGCAAG AGTTTAACGGCTCTGGTCCTCACCTTGAATTTCCAAGGTGAAGCATTGCCTGCTGATCCTACGCTTCATTTTGAGAACTTGAAGGTTCTTGTTATTGCTA ATTGTAGACTCACGGGATCTATACCCCAATGGTTGAGCAACAGCTCAAAATTGCAGTTGGTGGATTTGTCATGGAACAACTTGAGTGGAACTATTCCTTC CTGGTTTGGTGGTTTTGTAAATCTCTTTTACTTGGACTTATCAAACAATTCATTTACTGGCGAGATTCCAAGGAACTTGACTGAATTGCCAAGCCTCATC AGCAGGAGTATCTCAATTGAGGAGCCTTCACCGTATTTCCCATTATTCATGAGAAGGAATGAAAGTGGGAGGGGGTTACAGTATAATCAGGTTCGGAGCT TTCCACCTACTTTGGCACTTAGTGACAACTTCCTTACTGGACCAATTTGGCCGGAGTTCGGTAATCTGACAAAGCTCCATATTTTTGAGTTGAAGTCGAA CTTTTTGTCCGGAACTATACCTGGTGAATTATCGGGGATGACCAGCTTGGAGACTTTGGATTTGTCCCATAACAATCTTTCTGGGGTCATACCCTGGTCC TTGGTAGATCTCAGCTTTCTGTCCAAGTTCAGTGTTGCCTACAATCAACTACGTGGGAAGATCCCTACTGGAGGTCAGTTTATGACTTTCCCAAACTCAA GCTTCGAAGGGAATTATCTTTGTGGTGACCATGGTACCCCTCCTTGCCCAAAATCTGACGGACTTCCACTTGATTCACCCAGAAAATCAGGAATAAACAA ATATGTTATTATCGGAATGGCTGTTGGCATTGTTTTTGGTGCAGCTTCCCTTCTTGTCCTCATAATTGTGCTGAGAGCACACAGCCGGGGGTTGATCTTG AAAAGGTGGATGCTGACACATGATAAAGAAGCAGAAGAACTCGATCCAAGGCTAATGGTTCTGCTGCAAAGTACGGAGAATTATAAGGATCTCTCCCTGG AGGATCTACTGAAATCCACCAACAATTTTGACCAGGCAAATATCATTGGCTGTGGGGGTTTCGGTATAGTTTACAGAGCTACCCTCCCTGATGGTAGAAA GCTTGCAATCAAACGTCTCTCTGGTGACTCCGGTCAGATGGACAGGGAATTCCGTGCTGAAGTAGAAGCCCTGTCAAGAGCTCAGCATCCAAATCTCGTG CATCTCCAAGGTTATTGCATGTTCAAAAATGACAAACTCTTGGTATACCCTTACATGGAAAACAGCAGTTTGGATTATTGGTTGCATGAAAAAATCGATG GGCCATCCTCACTAGATTGGGATTCAAGGCTTCAAATTGCTCAAGGGGCTGCAAGGGGGCTTGCATATTTGCATCAAGCATGCGAGCCACATATCCTTCA CCGGGATATAAAGTCCAGCAATATCCTTTTAGACAAGAATTTTAAAGCTTATTTAGCGGATTTTGGTCTTGCACGGCTCATGCTACCTTACGATACCCAT GTCACAACTGATCTTGTGGGGACATTAGGCTACATTCCTCCTGAATACGGCCAAGCTGCAGTTGCTACCTACAAGGGGGATGTGTACAGTTTTGGGGTGG TTCTTTTGGAGCTTCTTACTGGGAGAAGGCCTATGGATATGTGCAAACCGAAAGGATCGCAGGATTTGATCTCTTGGGTGATTCAGATGAAGAAGGAAGA TAGAGAAAGCGAGGTGTTTGATCCATTCATTTATGACAAGCAGAATGACAAGGAACTGCTACGAGCACTCCAGATTGCATGCCTTTGCTTAAGCGAACAC CCAAAACTAAGGCCCTCAACAGAGCAGCTAGTTTCTTGGCTTGATAGCATCGACACCAACACCTAG
AA sequence Show only first row Show all	>Potri.010G097700.1 pacid=42798480 polypeptide=Potri.010G097700.1.p locus=Potri.010G097700 ID=Potri.010G097700.1.v4.1 annot-version=v4.1 MGVQALWVAFLVLGFLMFQAHVLQSQNLACNQNDLRALQEFMRGLQSPIQGWGTTNSSSSDCCNWSGITCYSSSSLGLVNDSVNSGRVTKLELVRQRLTG KLVESVGSLDQLRTLNLSHNFLKDSLPFSLFHLPKLEVLDLSSNDFSGSIPQSINLPSIKFLDISSNSLSGSLPTHICQNSSRIQVLVLAVNYFSGILSP GLGNCTTLEHLCLGMNDLIGGISEDIFQLQKLKLLGLQDNKLSGNLSTGIGKLLSLERLDISSNNFSGTIPDVFRSLSKLKFFLGHSNYFVGRIPISLAN SPSLNLLNLRNNSFGGIVELNCSAMTNLSSLDLATNSFSGNVPSYLPACKNLKNINLAKNKFTGKIPESFKNFQGLSYLSLSNCSITNLSSTLRILQQCK SLTALVLTLNFQGEALPADPTLHFENLKVLVIANCRLTGSIPQWLSNSSKLQLVDLSWNNLSGTIPSWFGGFVNLFYLDLSNNSFTGEIPRNLTELPSLI SRSISIEEPSPYFPLFMRRNESGRGLQYNQVRSFPPTLALSDNFLTGPIWPEFGNLTKLHIFELKSNFLSGTIPGELSGMTSLETLDLSHNNLSGVIPWS LVDLSFLSKFSVAYNQLRGKIPTGGQFMTFPNSSFEGNYLCGDHGTPPCPKSDGLPLDSPRKSGINKYVIIGMAVGIVFGAASLLVLIIVLRAHSRGLIL KRWMLTHDKEAEELDPRLMVLLQSTENYKDLSLEDLLKSTNNFDQANIIGCGGFGIVYRATLPDGRKLAIKRLSGDSGQMDREFRAEVEALSRAQHPNLV HLQGYCMFKNDKLLVYPYMENSSLDYWLHEKIDGPSSLDWDSRLQIAQGAARGLAYLHQACEPHILHRDIKSSNILLDKNFKAYLADFGLARLMLPYDTH VTTDLVGTLGYIPPEYGQAAVATYKGDVYSFGVVLLELLTGRRPMDMCKPKGSQDLISWVIQMKKEDRESEVFDPFIYDKQNDKELLRALQIACLCLSEH PKLRPSTEQLVSWLDSIDTNT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G02220		ATPSKR1	phytosulfokin receptor 1 (.1)		Potri.010G097700 [exp]	0	1	PSKR.1
AT5G58240		FHIT	FRAGILE HISTIDINE TRIAD (.1.2)		Potri.013G161100 [exp]	1.73	0.9501
AT2G38870			Serine protease inhibitor, pot...		Potri.016G079050 [exp]	2.00	0.9438
AT1G25530			Transmembrane amino acid trans...		Potri.008G118000 [exp]	2.00	0.9341
AT3G22060			Receptor-like protein kinase-r...		Potri.007G120600 [exp]	4.47	0.9336
AT1G23780			F-box family protein (.1)		Potri.017G134500 [exp]	4.47	0.8948
AT3G61980			serine protease inhibitor, Kaz...		Potri.014G108900 [exp]	5.29	0.9226
AT3G47570			Leucine-rich repeat protein ki...		Potri.006G273001 [exp]	7.41	0.9090
AT5G25930			Protein kinase family protein ...		Potri.018G057100 [exp]	8.66	0.9047
AT5G56220			P-loop containing nucleoside t...		Potri.001G472200 [exp]	10.39	0.9167
AT2G30590	WRKY	WRKY21	WRKY DNA-binding protein 21 (....		Potri.003G111900 [exp]	12.00	0.8974

Compare expression of checked genes

Potri.010G097700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.