Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-TOM3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02180 431 / 1e-153 TOM3 tobamovirus multiplication protein 3 (.1) AT1G14530 405 / 2e-143 THH1 TOM THREE HOMOLOG 1, Protein of unknown function (DUF1084) (.1), Protein of unknown function (DUF1084) (.2) AT4G21790 308 / 3e-105 ATTOM1, TOM1 tobamovirus multiplication 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G144400 [exp] 491 / 1e-177 AT2G02180 425 / 3e-151 tobamovirus multiplication protein 3 (.1) Potri.004G018100 [exp] 291 / 2e-98 AT4G21790 463 / 2e-166 tobamovirus multiplication 1 (.1) Potri.011G001000 [exp] 290 / 2e-98 AT4G21790 427 / 2e-152 tobamovirus multiplication 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006770 [exp] 311 / 1e-106 AT4G21790 463 / 1e-166 tobamovirus multiplication 1 (.1) Lus10020054 [exp] 305 / 4e-104 AT4G21790 457 / 2e-164 tobamovirus multiplication 1 (.1) Lus10018348 [exp] 300 / 5e-102 AT4G21790 462 / 2e-166 tobamovirus multiplication 1 (.1) Lus10007663 [exp] 298 / 4e-101 AT4G21790 464 / 4e-167 tobamovirus multiplication 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06454 [poplar] [flax] DUF1084 Protein of unknown function (DUF1084)
Representative CDS sequence Show only first row Show all	>Potri.010G097900.1 pacid=42798907 polypeptide=Potri.010G097900.1.p locus=Potri.010G097900 ID=Potri.010G097900.1.v4.1 annot-version=v4.1 ATGGATAAAGGCAGCAGCGGAGCAGAAATGGCCGGGACGGTGATTTCTTTCAAATTGAAAGAGGCCTCGAGCTGGTGGCACGATATTAATGAATCACCGT TCTGGCAAGATCGCATCTTTCATGTCCTGGCCGCCCTCTACGGTCTCGTCGCCGCCGTTGCTTTTATTCAATTGATAAGGATACAATTGAGAGTTCCGGA ATATGGCTGGACTACGCAGAAGGTTTTTCATTTTCTCAACTTCCTCGTGAATGGGGTTCGATGTCTACTATTTGTTTTTCGCCGGAATGTAGAAAGCATC CATCCACCGATTTTCCAACATATCCTCCTGGATTTCCCAAGTCTGGCATTCTTCACCACATATGCGCTTCTGGTTCTGTTCTGGGCAGAGATTTACTACC AGGCACGTGCGGTATCTACTGATGGACTCAGGCCAAGTTTCTTTACAATTAATGCGGTGGTTTATACCATTCAGATTGCTATGTGGTTGGTGTTGGCTTG GAAAACTATTCCAACTGTTGCCATCCTATCAAAGGTGTTCTTTGCAGGTGTGTCTTTGTTTGCAGCTCTTGGTTTTCTACTCTATGGTGGAAGGCTCTTC TTAATGTTGCAGCGATTCCCTGTGGAATCCAAAGGGAGGCGTAAGAAATTGCAAGAGGTTGGCTATGTAACCACCATATGTTTCTCATGCTTCCTTGTTA GATGCATTATGATGTGCTTTAATGCATTTGATAAAGCTGCAGACCTTGATGTGTTGGATCATCCAGTTCTAAACTTCATATATTACTTGCTGGTGGAGAT TTTACCTTCTTCTTTGGTTCTTTTCATTTTGAGGAAATTGCCTCCAAAACGTGGTATCACACAGTATCATCCCATACGTTAA
AA sequence Show only first row Show all	>Potri.010G097900.1 pacid=42798907 polypeptide=Potri.010G097900.1.p locus=Potri.010G097900 ID=Potri.010G097900.1.v4.1 annot-version=v4.1 MDKGSSGAEMAGTVISFKLKEASSWWHDINESPFWQDRIFHVLAALYGLVAAVAFIQLIRIQLRVPEYGWTTQKVFHFLNFLVNGVRCLLFVFRRNVESI HPPIFQHILLDFPSLAFFTTYALLVLFWAEIYYQARAVSTDGLRPSFFTINAVVYTIQIAMWLVLAWKTIPTVAILSKVFFAGVSLFAALGFLLYGGRLF LMLQRFPVESKGRRKKLQEVGYVTTICFSCFLVRCIMMCFNAFDKAADLDVLDHPVLNFIYYLLVEILPSSLVLFILRKLPPKRGITQYHPIR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G02180		TOM3	tobamovirus multiplication pro...		Potri.010G097900 [exp]	0	1	Pt-TOM3.2
AT4G14420			HR-like lesion-inducing protei...		Potri.008G165200 [exp]	7.07	0.7331
AT3G24160		PMP	putative type 1 membrane prote...		Potri.003G178400 [exp]	23.76	0.7550	Pt-PMP.2
AT2G02180		TOM3	tobamovirus multiplication pro...		Potri.008G144400 [exp]	24.24	0.7656	Pt-TOM3.1
AT3G05580		TOPP9	type one protein phosphatase 9...		Potri.013G014700 [exp]	33.01	0.7492
AT1G09580			emp24/gp25L/p24 family/GOLD fa...		Potri.003G019300 [exp]	35.94	0.7256
AT1G08110			lactoylglutathione lyase famil...		Potri.004G214966 [exp]	44.00	0.7407
AT1G51200			A20/AN1-like zinc finger famil...		Potri.006G056500 [exp]	46.04	0.7521
AT5G18940			Mo25 family protein (.1.2)		Potri.010G028700 [exp]	60.97	0.7484
AT3G24315		ATSEC20	Sec20 family protein (.1)		Potri.010G064900 [exp]	63.74	0.6493
AT3G28480			Oxoglutarate/iron-dependent ox...		Potri.017G075100 [exp]	68.37	0.7407

Compare expression of checked genes

Potri.010G097900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.