Plant FIBer expression Database

Potri.010G098200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G02160 349 / 4e-110 C3HZnF CCCH-type zinc finger family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G144200
[exp]
1006 / 0 AT2G02160 383 / 4e-123 CCCH-type zinc finger family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014490
[exp]
179 / 2e-48 AT2G02160 174 / 3e-47 CCCH-type zinc finger family protein (.1)
Lus10043286
[exp]
159 / 7e-42 AT2G02160 171 / 2e-46 CCCH-type zinc finger family protein (.1)
Lus10019430
[exp]
156 / 1e-40 AT2G02160 173 / 4e-47 CCCH-type zinc finger family protein (.1)
Lus10030063
[exp]
132 / 6e-32 AT2G02160 126 / 3e-30 CCCH-type zinc finger family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0537 CCCH_zf PF00642 zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
CL0537 CCCH_zf PF15663 zf-CCCH_3 Zinc-finger containing family
Representative CDS sequence
>Potri.010G098200.1 pacid=42799578 polypeptide=Potri.010G098200.1.p locus=Potri.010G098200 ID=Potri.010G098200.1.v4.1 annot-version=v4.1
ATGGTTGCGGCCACCCAACCACAACCACCTACACCTACTGCGTCCACAACAACATCCGCCGAAGAAGAAGCCTTGAAAAGGAATACTGATTGTGTTTACT
TTCTTGCTTCTCCTTTAACCTGCAAAAAGGGAAGTGAGTGTGAGTATCGCCACAGTGAATATGCCAGGGTTAATCCTAGGGATTGCTATTTTTGGTTGAA
TGGCAATTGCATGAATCCCAAGTGTGGGTTTCGTCATCCACCCCTTGATGGCTTGTTTGGCAACCAAACAACAGCCTCTGCTGGATCTTCCTTGCCGCCA
TCACACGCTGCTGCTGCAGCTGCCACACATGCTCCTCACAATTCAGGCAAACAAGGAGTCCTGTGCATTTTCTTTCAGCAGGGAATATGCTTGAAAGGTG
ACAGATGTGCTTTCTCCCATGGACCAAATCATGCCAGTAATAGAGTTTCTCAAACAATGGCATTTACCCCTGGTACTGAGGCCCACCCTCCAGAAAAGGC
TTTTGGTGGCCTTCAAAAGTGTACTCAAGAGCAGAAGCTTCCACAAGTGAATTTATCAAAGGCTGTTGAACCACCCACTGTAGCTAAACCTGTGTCAAAA
GCTGAAATTGCTTCAGCAAGGAACAGTGCTGGTGTTGCAAGGAATGTAGTGCCACCCAAAAGCACGGATGATGAAGTTCCCAGATATAAATCATCAAATC
TTCCTCCCGAGGTCAATGGAAATTCAAGTCGTTCCAATCAGTTGCATCTGTCACGGGTAGCAGATGATCATGTTAACCATAATGGAAAGGATGCTGATGA
GTATTTGAGGGAGTCCTCTCCTGGTTTTGATGTTCTTGTGGATGATGAGTTGAGGGATTCTGATTATTACCATGGTGAAGATCAATTTGGAAGAACAATA
GGTCATGAAGGGAGGAACTTGAACTCTGTTGATGAATATGACAGGGGCCATCCTGCTGATTATGGCTCGTTGCCTGATGACCAAGAAAGGTATGGTGATC
CACGAGGCTATGATCCCTATGAACATATGCAAGGGCAGCACGCATGGGAGCAGCACAGGGCGTCGTCAGAAAGAATGCTAGTGGCACCAGCACATCTGGA
AAGGCGAGGTTACTCGAAAGCTGATAGCCCTGAGCACATTGAAGGATCAGATTTGCGTTATCTTTTATCGAAACAAAGGAGGGTGAACGGCTTGAGATCA
GTTGTTAGTAATGATTTTGTCCCAGGCAATCATGTTGAGGAGCGAGGTTACCAGGGTTCTTCACGAAGGGACTCTCATCACTTACTCTCACATGAGAGCC
CCATTAGTAGTCGTCTTCGTGGTAGAATAAAGCTTCCAGGAGGATCTCCCAACGAAGGTGGTGACTTGCATGCAGAAAGGGAAATTGACAGGGGCAGGAA
TCGGGGAAGATTGTCACCAGTAAGGTCCCTGATCTCTTCCCAGCAAGGGAGGTTCCGGGATAGAATGAAAGCTAGGGTGGAAGAGGATTACAATGAAGGG
AGAAATTTTAGAGGTCCCCATGTGAGAAGAGAATTAGTAGATGATAAAATTACTAATTTTGCTGCTCCTAAAAGGCTTGCAGAGCTGAGAGGTGGGAAAA
ATGCAGAGGGTAAATCACAGCAATCCCTTGGAAAGCGGAAGTACTTGGAAGATCATCCACCATCTGATGCTGATCTCTCATTTGAAGGGCCAATGCCTCT
TAGTGAGATTCTTAAGAGAAAGAGAGGGGGTGGAGCTGCAGCTTCTGGTAGCAGAATATCATCTGTCATCGAGGATGGCAATAATCAAAAGGAAAGTAGG
CAAAGCCTCACCAGCAATTCCAACAACAAGGCAGTTGCAGAGACTCAAAGTGGATTTTCTTCTGTATTAAAGGACGATGACAGTAGCCAGATGCTAAAAA
ATAAAGAATCCAAGTTTGCTACTGATGATGCCCTTGGAACAGAAGGGGGAAACATTGAAATTGTTCATGGAAAGTCTTCTCAGCTACCCAATCCAAGTGA
GATTGAGACTGAAGATGGGATGATTGCTGATGACGGAATGGAAGATCACGAGTACGAGGGTGATGATCAGAGGGATGGTGATTATGAATATGAGCAGGCT
GATGAAGGAGAGTACAATTACGAAGAGGGTGAAAACATAGATGAAGAGGAATATGAAAACGAAGATGGAGATGACTTTGCCAAGAAAATTGGTGTCGTGT
TCTCATGA
AA sequence
>Potri.010G098200.1 pacid=42799578 polypeptide=Potri.010G098200.1.p locus=Potri.010G098200 ID=Potri.010G098200.1.v4.1 annot-version=v4.1
MVAATQPQPPTPTASTTTSAEEEALKRNTDCVYFLASPLTCKKGSECEYRHSEYARVNPRDCYFWLNGNCMNPKCGFRHPPLDGLFGNQTTASAGSSLPP
SHAAAAAATHAPHNSGKQGVLCIFFQQGICLKGDRCAFSHGPNHASNRVSQTMAFTPGTEAHPPEKAFGGLQKCTQEQKLPQVNLSKAVEPPTVAKPVSK
AEIASARNSAGVARNVVPPKSTDDEVPRYKSSNLPPEVNGNSSRSNQLHLSRVADDHVNHNGKDADEYLRESSPGFDVLVDDELRDSDYYHGEDQFGRTI
GHEGRNLNSVDEYDRGHPADYGSLPDDQERYGDPRGYDPYEHMQGQHAWEQHRASSERMLVAPAHLERRGYSKADSPEHIEGSDLRYLLSKQRRVNGLRS
VVSNDFVPGNHVEERGYQGSSRRDSHHLLSHESPISSRLRGRIKLPGGSPNEGGDLHAEREIDRGRNRGRLSPVRSLISSQQGRFRDRMKARVEEDYNEG
RNFRGPHVRRELVDDKITNFAAPKRLAELRGGKNAEGKSQQSLGKRKYLEDHPPSDADLSFEGPMPLSEILKRKRGGGAAASGSRISSVIEDGNNQKESR
QSLTSNSNNKAVAETQSGFSSVLKDDDSSQMLKNKESKFATDDALGTEGGNIEIVHGKSSQLPNPSEIETEDGMIADDGMEDHEYEGDDQRDGDYEYEQA
DEGEYNYEEGENIDEEEYENEDGDDFAKKIGVVFS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G02160 C3HZnF CCCH-type zinc finger family p... Potri.010G098200
[exp]
0 1
AT2G02160 C3HZnF CCCH-type zinc finger family p... Potri.008G144200
[exp]
2.64 0.8805
AT3G02710 ARM repeat superfamily protein... Potri.004G076600
[exp]
9.16 0.8643
AT3G13990 Kinase-related protein of unkn... Potri.003G063300
[exp]
11.61 0.8513
AT1G77030 hydrolases, acting on acid anh... Potri.005G185900
[exp]
12.04 0.8632
AT4G02400 U3 ribonucleoprotein (Utp) fam... Potri.014G128300
[exp]
12.32 0.8695
AT2G36480 ENTH/VHS family protein (.1.2.... Potri.006G115600
[exp]
12.36 0.8672
AT5G52530 dentin sialophosphoprotein-rel... Potri.004G079000
[exp]
12.60 0.8134
AT3G56860 UBA2A UBP1-associated protein 2A (.1... Potri.006G025600
[exp]
12.72 0.7980
AT2G35230 IKU1 HAIKU1, VQ motif-containing pr... Potri.001G142400
[exp]
15.23 0.8571
AT5G51300 splicing factor-related (.1.2.... Potri.001G126400
[exp]
16.97 0.8607

Potri.010G098200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.