Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	A1.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19990 768 / 0 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT5G20000 760 / 0 RPT6A AAA-type ATPase family protein (.1) AT1G53750 348 / 8e-117 RPT1A regulatory particle triple-A 1A (.1) AT2G20140 334 / 4e-111 RPT2b regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) AT4G29040 333 / 7e-111 RPT2A regulatory particle AAA-ATPase 2A (.1) AT1G53780 338 / 1e-110 peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases (.1.2.3) AT5G43010 326 / 1e-108 RPT4A regulatory particle triple-A ATPase 4A (.1) AT1G45000 320 / 3e-106 AAA-type ATPase family protein (.1.2) AT1G09100 313 / 2e-103 RPT5B 26S proteasome AAA-ATPase subunit RPT5B (.1) AT3G05530 311 / 1e-102 ATS6A.2, RPT5A regulatory particle triple-A ATPase 5A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G144100 [exp] 793 / 0 AT5G19990 741 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.001G161700 [exp] 350 / 8e-118 AT1G53750 809 / 0.0 regulatory particle triple-A 1A (.1) Potri.006G216600 [exp] 348 / 4e-117 AT1G53750 804 / 0.0 regulatory particle triple-A 1A (.1) Potri.018G056600 [exp] 344 / 2e-115 AT1G53750 803 / 0.0 regulatory particle triple-A 1A (.1) Potri.014G194700 [exp] 336 / 4e-112 AT4G29040 829 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.002G252600 [exp] 335 / 1e-111 AT4G29040 838 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.005G231700 [exp] 317 / 3e-105 AT1G45000 756 / 0.0 AAA-type ATPase family protein (.1.2) Potri.004G158600 [exp] 315 / 2e-104 AT1G45000 752 / 0.0 AAA-type ATPase family protein (.1.2) Potri.009G120500 [exp] 315 / 3e-104 AT1G45000 744 / 0.0 AAA-type ATPase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017762 [exp] 773 / 0 AT5G19990 797 / 0.0 regulatory particle triple-A ATPase 6A (.1) Lus10033055 [exp] 730 / 0 AT5G19990 749 / 0.0 regulatory particle triple-A ATPase 6A (.1) Lus10031815 [exp] 349 / 6e-117 AT1G53750 828 / 0.0 regulatory particle triple-A 1A (.1) Lus10031243 [exp] 348 / 2e-115 AT1G53750 841 / 0.0 regulatory particle triple-A 1A (.1) Lus10015524 [exp] 335 / 6e-113 AT2G20140 659 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10011901 [exp] 338 / 5e-111 AT2G20140 844 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10006976 [exp] 330 / 9e-110 AT4G29040 828 / 0.0 regulatory particle AAA-ATPase 2A (.1) Lus10019995 [exp] 336 / 1e-106 AT2G20140 827 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10017475 [exp] 316 / 1e-104 AT1G45000 759 / 0.0 AAA-type ATPase family protein (.1.2) Lus10017972 [exp] 314 / 6e-104 AT1G45000 756 / 0.0 AAA-type ATPase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF07724 [poplar] [flax] AAA_2 AAA domain (Cdc48 subfamily)
Representative CDS sequence Show only first row Show all	>Potri.010G098300.1 pacid=42798645 polypeptide=Potri.010G098300.1.p locus=Potri.010G098300 ID=Potri.010G098300.1.v4.1 annot-version=v4.1 ATGGCAACTGTAGGAGTGGAGAGGAAGCAGCAGCAGCAAACAGAATCAACGATGACGATGATAGCGGAGGAGAGCTGCTCGGCGAAAACGGGAGCGGTGA GGCAAGGAGAGGGTTTGAAGCAGTACTATCTCCAACACATCCATGAGCTTCAGCTCCTTGTCCGCCAAAAATCCCACAATCTTAATCGCCTCGAAGCGCA ACGCAATGGCCTTAATTCCAGAGTCAGGATGCTTAGAGAAGAGTCGCAGCTACTTCAAGAGCCTGGGTCATATGTTGGTGAAGTTGTCAAAGTAATGGGG AAGAACAAGGTGTTAGTTAAGGTTCATCCAGAGGGGAAGTATGTTGTTGATATTGATAAAAGTATTGATATCACAAAGATCACTCCATCAACAAGGGTTG CCCTTCGCAATGACAGCTATGTTCTTCACTTGATCTTGCCAAGCAAAGTGGATCCTTTGGTCAACCTCATGAAGGTTGAAAAAGTTCCAGATTCCACCTA TGACATGATCGGTGGTCTTGATCAACAAATTAAAGAGATTAAGGAGGTCATTGAACTTCCAATCAAACACCCTGAATTGTTTGAGAGTCTTGGAATTGCT CAACCAAAGGGTGTTCTGCTTTATGGACCTCCTGGCACAGGAAAAACTCTACTGGCTAGGGCAGTGGCTCATCACACTGACTGTACTTTCATCAGGGTTT CTGGTTCTGAATTAGTTCAGAAATACATTGGAGAAGGCTCTAGAATGGTCAGAGAGCTTTTTGTTATGGCAAGAGAGCATGCTCCATCAATCATTTTCAT GGATGAAATTGATAGTATTGGATCCGCTCGAATGGAATCTGGCAGTGGCAATGGTGACAGTGAGGTGCAGCGTACTATGCTGGAGCTCCTCAATCAGCTG GATGGATTTGAAGCATCAAACAAGATCAAGGTTTTGATGGCTACAAATCGGATTGATATTCTGGATCAAGCTCTCCTTAGGCCAGGAAGAATTGACAGGA AGATTGAATTTCCAAATCCCAACGTGGATTCACGTTTTGATATCGTGAAAATCCATTCAAGAAGGATGAATTTAATGCGTGGGATTGATATGAAGAAGAT AGCTGAGAAGATGAATGGGGCATCTGGTGCAGAGCTCAAGGCGGTGTGCACTGAGGCCGGAATGTTTGCTCTAAGAGAGAGGAGGGTCCATGTTACACAA GAAGATTTTGAGATGGCTGTAGCAAAGGTCATGAAGAAGGAGACAGAGAAGAACATGTCTTTGCGGAAGCTCTGGAAATAA
AA sequence Show only first row Show all	>Potri.010G098300.1 pacid=42798645 polypeptide=Potri.010G098300.1.p locus=Potri.010G098300 ID=Potri.010G098300.1.v4.1 annot-version=v4.1 MATVGVERKQQQQTESTMTMIAEESCSAKTGAVRQGEGLKQYYLQHIHELQLLVRQKSHNLNRLEAQRNGLNSRVRMLREESQLLQEPGSYVGEVVKVMG KNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIA QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQL DGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNVDSRFDIVKIHSRRMNLMRGIDMKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQ EDFEMAVAKVMKKETEKNMSLRKLWK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19990		ATSUG1, RPT6A	regulatory particle triple-A A...		Potri.010G098300 [exp]	0	1	A1.4
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Potri.002G252600 [exp]	2.82	0.7885	Pt-RPT2.2
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Potri.013G020400 [exp]	6.16	0.6310	SNF4.4
AT5G42970		FUS4, EMB134, C...	FUSCA 8, FUSCA 4, EMBRYO DEFEC...		Potri.002G263200 [exp]	7.74	0.6908
AT2G24420			DNA repair ATPase-related (.1....		Potri.006G276900 [exp]	7.93	0.6236
AT1G65700			Small nuclear ribonucleoprotei...		Potri.001G278000 [exp]	8.94	0.7101
AT1G25520			Uncharacterized protein family...		Potri.010G128400 [exp]	10.48	0.6685
AT2G16460			Protein of unknown function (D...		Potri.007G016300 [exp]	10.95	0.6418
AT2G01470		ATSEC12, STL2P	SEC12P-like 2 protein (.1)		Potri.008G130300 [exp]	16.30	0.6858
AT4G19003		VPS25	E2F/DP family winged-helix DNA...		Potri.001G135700 [exp]	20.39	0.6010
AT3G27430		PBB1	N-terminal nucleophile aminohy...		Potri.004G066000 [exp]	20.49	0.6919	Pt-PBB1.2

Compare expression of checked genes

Potri.010G098300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.