Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02150 924 / 0 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G01740 364 / 9e-117 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 334 / 2e-103 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT5G39710 329 / 3e-101 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G55840 318 / 2e-94 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 300 / 1e-90 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G59900 303 / 5e-90 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G61990 288 / 5e-84 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G28010 280 / 3e-83 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65560 282 / 1e-82 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G035700 [exp] 334 / 4e-103 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.009G105600 [exp] 320 / 8e-98 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G276500 [exp] 319 / 1e-97 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G032600 [exp] 313 / 7e-97 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.015G105400 [exp] 320 / 3e-95 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034200 [exp] 307 / 2e-94 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050180 [exp] 306 / 5e-94 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050400 [exp] 303 / 5e-93 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046200 [exp] 302 / 1e-92 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034421 [exp] 593 / 0 AT2G02150 706 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 324 / 2e-99 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 324 / 3e-99 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 324 / 3e-97 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013283 [exp] 303 / 1e-92 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10036020 [exp] 307 / 3e-92 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 308 / 1e-91 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013841 [exp] 304 / 3e-90 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 295 / 9e-89 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10037968 [exp] 298 / 8e-87 AT5G55840 1131 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.010G098400.1 pacid=42797839 polypeptide=Potri.010G098400.1.p locus=Potri.010G098400 ID=Potri.010G098400.1.v4.1 annot-version=v4.1 ATGAGGCATATTGAAGCAGCTATCATTTTCCTCTTCAAAATGTTAATTTCTCTCCGCAATTTGGGTAGCAGTTTACCTCGAAGAGTAAGCCCTCCTTGTA ATCATCACCTCTCTTCCATTTTCTCTTCACCTTCAACAACAACTACACGTGCTTGTTTAATATCTTGCTGCTTCACTGGCGTCCTTTGCATACTTAGGTT CCCATTTGTAACCAAATCAAACTCAAACCCCTCCAATTTTTTTGATGTTTTAGACAAAGTTTCAATGACTAAAATCATTCAACAAGACCAATGGAATGAC CCAAGAGTCGTTGGTTCAATTCAGTCTTCCTTAGCCCCAATATGGGTGTCTCGGGTTTTGGTTGAATTCAAACAAGATCCAAAATTGGCTTTGAAATTCT TCAAATGGGCTAAAACCCGAGTTGGGTTTCGCCACACTACTGAATCCTATTGTATATTAGCGCACATTTTGTTTTATGCTAGAATGTACTTTCATGCTAA TAATATTCTGAAGGAATTGGTTTTATCCAGCTGGGTTTTGCCGGGCTCTGATGTTTTTGAAATTTTATGGACTACGAGGAATGTTTGTGTTCCAGGGTTT GGTGTTTTTGATGCTTTGTTTAGTGTTTTGGTTGAACTAGGAATGCTTGAGGCTGCTGGTCAGTGTTTTTTGAGGATGACCAAGTTTAGGGTGTTGCCAA AGGCACGGTCTTGTAATGCCTTTTTGCATAGGCTGTCTAAGGCAGGGGAAGGGGACTTATCAAGGGATTTTTTTAGGGACATGGTTGGGGCAGGTATTGC CCCAACGGTATTTACATATAATATTATGATAGGTCATGTGTGCAAAGAAGGGGATATGCTGACTGCTAGAAGCTTGTTTGAACAGATGAAAAAGATGGGG TTAACGCCAGATATTGTTACATATAACACACTTATTGATGGATATGGTAAGATTGGGTTGCTGGATGAATCTGTTTGCTTATTTGAAGAAATGAAGTTCA TGGGTTGTGAACCCGATGTAATAACCTACAATGCCTTGATTAACTCTTTCTGTAAATTTAAAGGAATGCTTAGAGCTTTTGAATTTTTTCGTGAGATGAA GGATAAAGATTTGAAACCAAATGTCATATCTTATAGCACATTAATCGATGCTTTATGCAAGGAGGGGATGATGCAAATGGCAATTAAATTTTTTGTGGAT ATGACCCGTGTTGGTTTGTTACCCAATGAATTCACATATAGTTCTTTAATTGATGCAAACTGTAAAGCTGGCAATCTAGGTGAAGCTTTCATGCTGGCTG ATGAGATGTTGCAGGAACATGTTGACTTGAACATTGTTACATACACGACTTTGCTGGATGGCCTTTGTGAAGAAGGGATGATGAACGAAGCAGAAGAGTT ATTTAGGGCAATGGGGAAAGCTGGGGTAACTCCTAACCTGCAAGCTTATACTGCCCTTATTCATGGGCACATCAAGGTTAGGAGCATGGATAAAGCCATG GAGTTATTCAATGAAATGAGAGAAAAAGATATCAAACCAGACATATTGCTTTGGGGAACCATTGTTTGGGGTCTTTGCAGTGAAAGTAAGCTTGAAGAAT GTAAGATTATAATGACTGAAATGAAGGAGTCTGGTATAGGTGCCAACCCTGTCATATATACAACACTAATGGATGCTTACTTTAAGGCAGGGAATCGCAC AGAAGCAATCAATCTGCTAGAAGAGATGCGGGACTTGGGTACTGAGGTTACAGTTGTGACCTTTTGTGCATTAATTGACGGTTTGTGCAAAAGGGGTTTA GTTCAAGAGGCAATTTATTACTTTGGCAGGATGCCAGACCATGATTTACAACCCAATGTTGCAGTTTATACAGCCCTTATTGATGGTCTTTGTAAAAATA ATTGTATTGGAGATGCAAAGAAGCTGTTTGATGAAATGCAAGACAAAAATATGATTCCAGATAAAATTGCTTATACTGCAATGATAGATGGAAATTTGAA GCATGGGAACTTTCAAGAAGCATTGAATATGCGAAACAAGATGATGGAAATGGGTATAGAACTTGATCTGTATGCATATACGTCCCTGGTCTGGGGGTTG TCACAATGTGGCCAAGTGCAGCAAGCAAGGAAGTTTCTTGCTGAGATGATTGGAAAGGGTATCATTCCTGATGAGACTCTGTGTACTCGACTATTGAGAA AGCATTATGAACTAGGAAATATCGATGAAGCTATTGAACTGCAAAATGAATTGGTGGAAAAGGGTCTAATCCATGGCAACAGCAATCCTGCAGTTCCTAA TATTCAAACTCGAGATGATTTAGATTTGTCTAATTTTACAAAATAA
AA sequence Show only first row Show all	>Potri.010G098400.1 pacid=42797839 polypeptide=Potri.010G098400.1.p locus=Potri.010G098400 ID=Potri.010G098400.1.v4.1 annot-version=v4.1 MRHIEAAIIFLFKMLISLRNLGSSLPRRVSPPCNHHLSSIFSSPSTTTTRACLISCCFTGVLCILRFPFVTKSNSNPSNFFDVLDKVSMTKIIQQDQWND PRVVGSIQSSLAPIWVSRVLVEFKQDPKLALKFFKWAKTRVGFRHTTESYCILAHILFYARMYFHANNILKELVLSSWVLPGSDVFEILWTTRNVCVPGF GVFDALFSVLVELGMLEAAGQCFLRMTKFRVLPKARSCNAFLHRLSKAGEGDLSRDFFRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMG LTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVD MTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAM ELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGL VQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQEALNMRNKMMEMGIELDLYAYTSLVWGL SQCGQVQQARKFLAEMIGKGIIPDETLCTRLLRKHYELGNIDEAIELQNELVEKGLIHGNSNPAVPNIQTRDDLDLSNFTK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G02150		EMB2794	EMBRYO DEFECTIVE 2794, Tetratr...		Potri.010G098400 [exp]	0	1
AT3G56690		CIP111	Cam interacting protein 111 (....		Potri.006G035000 [exp]	1.00	0.8775	Pt-CIP111.1
AT1G63250			DEA(D/H)-box RNA helicase fami...		Potri.003G124100 [exp]	3.16	0.8311
AT5G40480		EMB3012	embryo defective 3012 (.1)		Potri.001G345100 [exp]	8.36	0.8195
AT5G09840			Putative endonuclease or glyco...		Potri.019G004000 [exp]	11.18	0.8249
AT2G34780		EMB1611, MEE22	EMBRYO DEFECTIVE 1611, materna...		Potri.001G463700 [exp]	12.84	0.8060
AT3G19510	HD	HAT3.1	Homeodomain-like protein with ...		Potri.009G093000 [exp]	13.41	0.7980
AT1G77010			Pentatricopeptide repeat (PPR)...		Potri.002G075200 [exp]	16.58	0.8130
AT1G26370		RID1	RNA helicase family protein (....		Potri.008G096800 [exp]	18.57	0.7906
AT4G30990			ARM repeat superfamily protein...		Potri.001G318800 [exp]	20.09	0.8263
AT3G16010			Pentatricopeptide repeat (PPR-...		Potri.001G180000 [exp]	24.65	0.7982

Compare expression of checked genes

Potri.010G098400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.