Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18420 328 / 4e-112 Protein prenylyltransferase superfamily protein (.1) AT2G37400 129 / 2e-34 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39470 128 / 4e-34 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G02590 125 / 2e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53560 122 / 4e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09490 88 / 1e-19 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G143600 [exp] 503 / 2e-180 AT3G18420 356 / 4e-123 Protein prenylyltransferase superfamily protein (.1) Potri.008G142980 [exp] 289 / 6e-99 AT3G18420 244 / 5e-82 Protein prenylyltransferase superfamily protein (.1) Potri.007G079200 [exp] 148 / 2e-41 AT4G39470 314 / 5e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G085700 [exp] 142 / 2e-39 AT4G39470 296 / 7e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G080000 [exp] 120 / 5e-31 AT2G37400 342 / 4e-117 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G213600 [exp] 115 / 1e-29 AT3G53560 327 / 1e-111 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G081200 [exp] 60 / 1e-11 AT3G53560 127 / 2e-37 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G064900 [exp] 43 / 0.0002 AT2G34540 110 / 3e-28 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031923 [exp] 233 / 1e-74 AT3G18420 270 / 2e-89 Protein prenylyltransferase superfamily protein (.1) Lus10035087 [exp] 142 / 1e-41 AT3G18420 133 / 6e-39 Protein prenylyltransferase superfamily protein (.1) Lus10024433 [exp] 113 / 1e-28 AT2G37400 271 / 1e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025299 [exp] 112 / 8e-28 AT2G37400 272 / 3e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035707 [exp] 85 / 2e-18 AT4G39470 257 / 3e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF07719 [poplar] [flax] TPR_2 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13371 [poplar] [flax] TPR_9 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.010G098500.1 pacid=42797204 polypeptide=Potri.010G098500.1.p locus=Potri.010G098500 ID=Potri.010G098500.1.v4.1 annot-version=v4.1 ATGAACGTAACTCTAGCCACTTCTCTTCTCCACCTCAGAACCCCTTCTTCCTTCAACTCACCTTCGCTTCTCCATTTCACCACTCTCAAATCCCACAATT CCACTTCGACCCCTCCTCTCAAAATACCAAAAGCCTCCTCCTCCTCCTCCTCCCCCTCCTCCTCAAATGACACTTTCAAAAACCCACTAACCCAAACCCT AAAAACTCTCACCAAAACAGCAATTTTGATCGGTGTTACAGCTTCCATGGCTGGTAAATTCCCTGTACTGCCTGCAAAAGCCGAAAACCCGGCAGCTCTC ACTGAACAAAACCCGACCCTCGAAGAAGAAGAGGAAGGCATGGAGAAACATCAAAACCAGAACCAAAGTGACGCATCGACTCCTTTAGAAGCATTCCTAG AATCTAATGCTGAAGCAATTGAGTCTCTAAAATCACTTTTACAACAGAAGCTTGAAAAGGGCCAAGACGACGAGGCTTTAAATATTTTAAAGCAGTTAGT ATCTGCGCAACCGGAGGTTACTGAATGGAAGTTTTTGATGGCAAGATTGCTGAATGAAATGCGCCGGGTCCAAGACGCTCGCAATGTGTTTGAAGAAATT CTCGTTGCGAATCCCTTGTCTTTTGAGGCATTGTTCGAGAATGCACTATTAATGGAGCGCAGTGGAGAAGGAGACGCGGTTATTAGGAGGTTACGAGAGG CTTTAGATATTGCAGAAGAGGAGAATAAAGTGAAAGAAGCGAGGGACGTGAGATTGATTATGGCTCAAATACAGTTTCTGCAAAAGAACGTGGAGGAGGC GCTGGAGAGTTATCAAGAGTTGTCGAATGAGGATCCTAAAGATTTCAGGCCTTATTTTTGTAGAGGGATGATATACAGTTTGCTTGATAGAAACGAGGAG GCAAAAGAGCAGTTTGCCAAGTATCGCGAACTTTCTCCAAAGAAGTTTGAGGTGGAGGGATATTTGAGGACCTCGTTATCAAGGATGAAGCTTTTTGGGT CGAACGAGAAGAATTGA
AA sequence Show only first row Show all	>Potri.010G098500.1 pacid=42797204 polypeptide=Potri.010G098500.1.p locus=Potri.010G098500 ID=Potri.010G098500.1.v4.1 annot-version=v4.1 MNVTLATSLLHLRTPSSFNSPSLLHFTTLKSHNSTSTPPLKIPKASSSSSSPSSSNDTFKNPLTQTLKTLTKTAILIGVTASMAGKFPVLPAKAENPAAL TEQNPTLEEEEEGMEKHQNQNQSDASTPLEAFLESNAEAIESLKSLLQQKLEKGQDDEALNILKQLVSAQPEVTEWKFLMARLLNEMRRVQDARNVFEEI LVANPLSFEALFENALLMERSGEGDAVIRRLREALDIAEEENKVKEARDVRLIMAQIQFLQKNVEEALESYQELSNEDPKDFRPYFCRGMIYSLLDRNEE AKEQFAKYRELSPKKFEVEGYLRTSLSRMKLFGSNEKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18420			Protein prenylyltransferase su...		Potri.010G098500 [exp]	0	1
AT5G09320		VPS9B	Vacuolar sorting protein 9 (VP...		Potri.009G169600 [exp]	2.00	0.9505
AT2G37400			Tetratricopeptide repeat (TPR)...		Potri.016G080000 [exp]	2.23	0.9543
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Potri.007G009500 [exp]	4.47	0.9392
AT3G48500		PDE312, PTAC10	PLASTID TRANSCRIPTIONALLY ACTI...		Potri.015G091700 [exp]	9.79	0.9432
AT3G53630			unknown protein		Potri.006G082400 [exp]	12.00	0.9263
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Potri.004G112800 [exp]	12.36	0.9275	Pt-NEMDH.2
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Potri.008G193800 [exp]	12.64	0.9387
AT1G71060			Tetratricopeptide repeat (TPR)...		Potri.010G114700 [exp]	12.96	0.9300
AT2G01860		EMB975	EMBRYO DEFECTIVE 975, Tetratri...		Potri.005G252300 [exp]	15.74	0.9363
					Potri.004G178101 [exp]	15.87	0.9092

Compare expression of checked genes

Potri.010G098500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.