Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13770 582 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G53700 139 / 3e-34 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G06710 135 / 5e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G42310 132 / 5e-32 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G02860 129 / 4e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05670 125 / 6e-30 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT5G12100 123 / 4e-29 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G62670 122 / 6e-29 RPF2 rna processing factor 2 (.1) AT3G06920 119 / 6e-28 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 119 / 8e-28 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G142900 [exp] 1001 / 0 AT5G13770 544 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.010G035700 [exp] 142 / 1e-35 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.004G013300 [exp] 142 / 2e-35 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G257300 [exp] 137 / 6e-34 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G032100 [exp] 135 / 1e-33 AT1G62930 451 / 2e-152 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G297300 [exp] 130 / 2e-31 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G271400 [exp] 129 / 2e-31 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.002G010900 [exp] 129 / 3e-31 AT5G42310 939 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.006G271200 [exp] 128 / 5e-31 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000268 [exp] 624 / 0 AT5G13770 528 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10035089 [exp] 610 / 0 AT5G13770 525 / 1e-180 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10006373 [exp] 149 / 1e-37 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 149 / 1e-37 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013894 [exp] 130 / 4e-31 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013283 [exp] 129 / 4e-31 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10002107 [exp] 126 / 5e-30 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018318 [exp] 125 / 1e-29 AT2G35130 801 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10027916 [exp] 124 / 2e-29 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025533 [exp] 124 / 3e-29 AT1G06710 980 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.010G098700.1 pacid=42800155 polypeptide=Potri.010G098700.1.p locus=Potri.010G098700 ID=Potri.010G098700.1.v4.1 annot-version=v4.1 ATGGCCATTTCCAGTTCTCCAGACTGGTCAGCACCTTCCATTAACTCTTGCAGAAAGCCCCACAAGATTATCTTCCCTCAAACATGCAAAACCCTTCACT TTTTCCCTCTCCCGTGCTTCAATATTCCTGGTTGTCACGTGAATTCTTCTTCTAGCTGTCCATCCCCTATCCTAGAAGAAGAGCCGATATCCACGAATTT TCCTGTCATCCAACTGGACTTGAAACTTGAAGATACCCAACGCTATCCAATTCCAGATCACCCAGACAAGTTAAATGATTTTTTATGTGGGGTTCTGCAA GATCCCAAGTCTGAAGAACTAGCATACGAGTACTATAAGAAAGCAAAAGAAAAGCCAGAATTTAGGCCACAAAGACCAGTGCTAAAGCTTCTCATAAGGT ACTTGATTCAATCAGATAAATGGGGTTTGGTTTTGTCGTTGGCTGATGACTTTAAAAAATACAATGTGTTCCCAGATAGTTTTACTTTTTCAACTCTGGT TAGTAGTTGCATTAGAGCTAGAAGATTCAAGATTGTAGAGAATTTACTTGAAAATTTTAAATCTGATAGTAAAATTGCTGTTTTGGCTTTTGATTCAGCA ATGAAAGGGTATAATAAGCTACATATGTATGGTAGCACAATCTCTGTACACGAAAAGATGATATTAGCAGGCATTCCTTTGGATTCTAGGTGTTATTGTC AGATAATGAAGGCCTATTATAAATTAGGTGATGCAGAGAAAGTTGTTGCATTGTTTAACGAGTTTGAAAGTAGAAAACTGGATTCAAAACCAATGATTCT AAGACAAATATTCAAGATATTATGTTTGTCATTGGGGAGATCAGGCCAAGCTTTTCAAGCTCTTGAATACTCTAGAGACATGAGAAAGAAAGGAATTTTG GAGGACTCTTCAATTTACTCTTCCTTAATCTGTTCATTTGCAAATATTCGAGAAGTAGAGGTCGCCGAAGAGCTTTTCAAAGAAGCTCTAGAGAAGAGAA TGTTAAGGGATCCTGAAATTGTTTTGAGGCTTGTTTTGATGTATATAGAAGAAGGGCAAATGGAGAAGACAATTGAGATTGTTAAGGTAATGAAGGGTAC TGCTAATCTGAAGGTGTCTGATTGCATTTTCTGTGCAATTGTCAATGGCTTTTCCAAAAGGAGAGGGTTCAGTGCAGCTGTTAAGGTTTATGAGGAGTTG AAATATGATGGTTGTGATCCAGGACAAGTGACATATGCTTCTGTAATAAATGCCTATTGCCGAGCTGGGCTTTATTCTAAAGCTGAAATGGTGTTTTCTG AGATGGAGGAAAAGGGGTTTGACAAATGTGTTGTGGCATACTCTAGCATGATCTCAATGTATGGGAAAACTGGTAGGGCAAGAGATGCAACGAGGCTTGT AGCAAAGATGAAACTAAAAGGTTGTGAGCCAAATGTATGGATATACAATTCTTTGTTGGACATGCATGGGAGAGCCAAGAATTTAAGGCAGGTGGAGAAG CTATGGAAGGAAATGAAGAGAAGGAAAGTGGCACCAGATAAAGTGACTTACAGTAGTGTTATAAGTGCTTATAACAAGTCCAAGGAGTACGAGATGTGCG TGAGGTATTACCATGAGTACAGGATTAACGGGGGTGTGATTGACGGGGCAATGGCAGGAATTATGGCTGGAGTTTTCTCTAAAATTAGTAGGATTGACGA GTTGGTGAAGCTTTTAAGAGACATGAAATCTGAAGGAACACCAATAGACGAGAGGCTTTATAGATCCGCTACGAATGCAATGAGGGATGCTGGACTGGAT ATCCAAGCCAAATGGTTGCAAGACAGCTTTAAGGCAAAGTAA
AA sequence Show only first row Show all	>Potri.010G098700.1 pacid=42800155 polypeptide=Potri.010G098700.1.p locus=Potri.010G098700 ID=Potri.010G098700.1.v4.1 annot-version=v4.1 MAISSSPDWSAPSINSCRKPHKIIFPQTCKTLHFFPLPCFNIPGCHVNSSSSCPSPILEEEPISTNFPVIQLDLKLEDTQRYPIPDHPDKLNDFLCGVLQ DPKSEELAYEYYKKAKEKPEFRPQRPVLKLLIRYLIQSDKWGLVLSLADDFKKYNVFPDSFTFSTLVSSCIRARRFKIVENLLENFKSDSKIAVLAFDSA MKGYNKLHMYGSTISVHEKMILAGIPLDSRCYCQIMKAYYKLGDAEKVVALFNEFESRKLDSKPMILRQIFKILCLSLGRSGQAFQALEYSRDMRKKGIL EDSSIYSSLICSFANIREVEVAEELFKEALEKRMLRDPEIVLRLVLMYIEEGQMEKTIEIVKVMKGTANLKVSDCIFCAIVNGFSKRRGFSAAVKVYEEL KYDGCDPGQVTYASVINAYCRAGLYSKAEMVFSEMEEKGFDKCVVAYSSMISMYGKTGRARDATRLVAKMKLKGCEPNVWIYNSLLDMHGRAKNLRQVEK LWKEMKRRKVAPDKVTYSSVISAYNKSKEYEMCVRYYHEYRINGGVIDGAMAGIMAGVFSKISRIDELVKLLRDMKSEGTPIDERLYRSATNAMRDAGLD IQAKWLQDSFKAK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13770			Pentatricopeptide repeat (PPR-...		Potri.010G098700 [exp]	0	1
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Potri.014G155800 [exp]	3.00	0.9566	HPL1.1
AT5G38510			Rhomboid-related intramembrane...		Potri.017G112900 [exp]	3.46	0.9547
AT1G74470			Pyridine nucleotide-disulphide...		Potri.012G068801 [exp]	8.12	0.9571
AT2G23840			HNH endonuclease (.1)		Potri.019G033200 [exp]	11.61	0.9408
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Potri.005G069100 [exp]	12.72	0.9257
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Potri.010G160200 [exp]	13.19	0.9199
AT5G67150			HXXXD-type acyl-transferase fa...		Potri.003G057200 [exp]	16.00	0.9432
AT4G17300		ATNS1, NS1, OVA...	ovule abortion 8, Class II ami...		Potri.017G028800 [exp]	19.00	0.9251	NS1.2
AT3G59400		GUN4	GENOMES UNCOUPLED 4, enzyme bi...		Potri.017G030100 [exp]	20.12	0.9200
AT1G61520		LHCA3*1, LHCA3*...	photosystem I light harvesting...		Potri.014G172400 [exp]	20.34	0.9466	LHCA3*1.1,Lhca3

Compare expression of checked genes

Potri.010G098700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.