Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14570 555 / 0 UBX domain-containing protein (.1.2.3.4) AT4G14250 270 / 3e-82 structural constituent of ribosome (.1.2) AT1G59550 149 / 4e-41 UBX domain-containing protein (.1) AT3G23605 103 / 5e-26 Ubiquitin-like superfamily protein (.1) AT4G11740 42 / 0.0006 SAY1 Ubiquitin-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G142800 [exp] 827 / 0 AT1G14570 541 / 0.0 UBX domain-containing protein (.1.2.3.4) Potri.014G075600 [exp] 45 / 8e-05 AT4G00752 273 / 8e-87 UBX domain-containing protein (.1) Potri.001G109500 [exp] 44 / 0.0002 AT4G11740 429 / 2e-144 Ubiquitin-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039137 [exp] 624 / 0 AT1G14570 519 / 0.0 UBX domain-containing protein (.1.2.3.4) Lus10013795 [exp] 623 / 0 AT1G14570 521 / 0.0 UBX domain-containing protein (.1.2.3.4) Lus10027684 [exp] 47 / 3e-05 AT4G10790 219 / 3e-67 UBX domain-containing protein (.1) Lus10041365 [exp] 44 / 0.0002 AT4G11740 241 / 4e-74 Ubiquitin-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00789 [poplar] [flax] UBX UBX domain CL0172 [poplar] [flax] Thioredoxin PF13899 [poplar] [flax] Thioredoxin_7 Thioredoxin-like CL0214 [poplar] [flax] UBA PF14555 [poplar] [flax] UBA_4 UBA-like domain
Representative CDS sequence Show only first row Show all	>Potri.010G098800.2 pacid=42798383 polypeptide=Potri.010G098800.2.p locus=Potri.010G098800 ID=Potri.010G098800.2.v4.1 annot-version=v4.1 ATGGAGAGAATGTTATCCGAGAATGACGAGCAGAGTATGGTGTCTTCCTTCCTCGAGATCGCCGTTGGCCAAACTGCCGAGACTGCCCGTCAGTTCTTGC AGGCCACAAGCTGGAAGCTTGAAGATGCTATTCAGTTGTTCTATGTAGGCAATGAAGGTGGGGCTGTTGCATCTGCGTCGCATCCTCCGCCAACAGAAAC CTGGCCAGAAGTACTTGAAAGTGGATTGAAGGACTTGGAAAATGAAAAGGTTGGACATAGTGATGGAGAGGAAGTACGTGCTCCTTTACCTGTTGTTAGG GATACCCTTTATGATGATGCAATGTTATATGGAGCATCAAGGACAGGATACCCACCACATGAAGCCAGTTCATTGATTGCATTCCGCAACTTTGACGAGG AAATGAAACATCCTGGTGTGTGGGAATCAGACCAAGGTTCTACATCCACGACAGATAACAGTCGAGACAATCTTGCTTCTCTATATCGTCCTCCTTTTCA TCTGATGTTCCATGGATCATTTGAAAAGGCAAAAGGAGCTGCTTCTGTTCAGGACAAATGGCTTCTAGTGAACTTGCAATCCACAAAGGAGTTCAGCTCA CATATGTTAAACCGGGATACATGGGCAAATGAAGCTGTTGCTCAAACGATCAGTACTAATTTTATCTTTTGGCAGGTATATGATGATACAAGTGAGGGAC AGAAAGTTTGCACTTATTACAAATTGGATTCTATTCCAGTAGTCCTCATAATAGACCCAATCACAGGACAAAAGATGCACTCATGGGTTGGAATGGTGCA GCCTGAGAGTTTGCTAGAGGATCTAGTACCATTTATGGATGGCGGTCCAAGGGATCATCACAAAACCCTATCTCATAAACGTCAAAGGGGTAGTTCTCTA ACTCCACCAAAAAGCAAAGCTCTAGTGTCTGCTTATGAAACTAAAGAAGAAGATGAGGAAGTGCTAAGGGCATTAGCTGCTTCTATGGAGAGCATGAAAG ACTCCAGTGTGATTGCTTCTAACAAAAAAGATATTGCTTCTAACGACAAAGATGATGCTAGTACTGCTAAGGGAGAAGAAAAATGTTCGACTAAGACACT AACATATCCACCTCTGCCTGAAGAACCCAGCGGCGACAAGAGCCTCCTTTGCAGGGTTGGAATTCGTCTTCCTGATGGACGCAGAGTCCAAAGAAATTTC CTAAAAACTGATCCAATACGGCTGCTATGGTCATTCTGCTATTCTCAACTAGAAGAAGCTGGGACAAAGCTGTTTTGTTTGAAAGAGGCAATTCCAGGAG CAAAGCGTCTGGATTATGATAGTACAATGACCTTTGGGGAGTCGGGGTTGGCCAACTCTATGATCTCAGTTGCATGGGAGTGA
AA sequence Show only first row Show all	>Potri.010G098800.2 pacid=42798383 polypeptide=Potri.010G098800.2.p locus=Potri.010G098800 ID=Potri.010G098800.2.v4.1 annot-version=v4.1 MERMLSENDEQSMVSSFLEIAVGQTAETARQFLQATSWKLEDAIQLFYVGNEGGAVASASHPPPTETWPEVLESGLKDLENEKVGHSDGEEVRAPLPVVR DTLYDDAMLYGASRTGYPPHEASSLIAFRNFDEEMKHPGVWESDQGSTSTTDNSRDNLASLYRPPFHLMFHGSFEKAKGAASVQDKWLLVNLQSTKEFSS HMLNRDTWANEAVAQTISTNFIFWQVYDDTSEGQKVCTYYKLDSIPVVLIIDPITGQKMHSWVGMVQPESLLEDLVPFMDGGPRDHHKTLSHKRQRGSSL TPPKSKALVSAYETKEEDEEVLRALAASMESMKDSSVIASNKKDIASNDKDDASTAKGEEKCSTKTLTYPPLPEEPSGDKSLLCRVGIRLPDGRRVQRNF LKTDPIRLLWSFCYSQLEEAGTKLFCLKEAIPGAKRLDYDSTMTFGESGLANSMISVAWE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14570			UBX domain-containing protein ...		Potri.010G098800 [exp]	0	1
AT5G49540			Rab5-interacting family protei...		Potri.008G102200 [exp]	17.32	0.7128
AT2G03620		AtMRS2-5, AtMGT...	magnesium transporter 3 (.1.2)		Potri.008G096200 [exp]	18.00	0.6514
AT1G71340		AtGDPD4	glycerophosphodiester phosphod...		Potri.013G095300 [exp]	28.82	0.6776
AT4G35987			S-adenosyl-L-methionine-depend...		Potri.007G057000 [exp]	29.46	0.6352
AT3G15750			Essential protein Yae1, N-term...		Potri.003G201500 [exp]	89.33	0.5729
AT2G26590		RPN13	regulatory particle non-ATPase...		Potri.006G078800 [exp]	117.83	0.6209
AT4G39520			GTP-binding protein-related (....		Potri.007G080900 [exp]	121.31	0.6163
AT2G29540		ATRPAC14, ATRPC...	RNApolymerase 14 kDa subunit (...		Potri.001G246600 [exp]	173.89	0.5855	Pt-ATRPC14.1
AT1G20575		DPMS1	dolichol phosphate mannose syn...		Potri.002G010300 [exp]	189.71	0.5706
AT1G14300			ARM repeat superfamily protein...		Potri.013G124050 [exp]	205.75	0.5845

Compare expression of checked genes

Potri.010G098800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.