Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31050 209 / 3e-62 bHLH bHLH111 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G20640 115 / 7e-28 bHLH bHLH123 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G19500 105 / 3e-25 bHLH bHLH113 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G31730 101 / 3e-25 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G29100 106 / 1e-24 bHLH bHLH068 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G61660 103 / 5e-24 bHLH bHLH112 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT1G27660 100 / 1e-22 bHLH bHLH110 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G05710 93 / 3e-22 bHLH bHLH153 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT2G20100 97 / 9e-22 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G05170 90 / 3e-20 bHLH bHLH114 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G142700 [exp] 789 / 0 AT1G31050 176 / 9e-50 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G051600 [exp] 115 / 1e-28 AT4G29100 197 / 4e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G410600 [exp] 117 / 2e-28 AT3G20640 274 / 2e-87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G029100 [exp] 115 / 2e-27 AT1G61660 216 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.001G185900 [exp] 111 / 4e-27 AT4G29100 212 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G033000 [exp] 114 / 5e-27 AT1G61660 216 / 2e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.011G129500 [exp] 113 / 5e-27 AT3G20640 289 / 3e-93 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G126800 [exp] 105 / 1e-26 AT1G05710 192 / 4e-64 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.002G032400 [exp] 110 / 3e-26 AT1G27660 234 / 3e-72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007613 [exp] 122 / 6e-31 AT1G61660 194 / 1e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10018400 [exp] 120 / 3e-30 AT1G61660 195 / 3e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10013874 [exp] 116 / 7e-29 AT3G19500 151 / 7e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10038550 [exp] 117 / 5e-28 AT3G20640 231 / 4e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10010638 [exp] 108 / 2e-25 AT1G27660 180 / 1e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10023669 [exp] 103 / 6e-24 AT2G20100 223 / 5e-69 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10027064 [exp] 97 / 1e-23 AT1G05710 174 / 9e-57 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10025599 [exp] 96 / 2e-23 AT1G05710 169 / 8e-55 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10041649 [exp] 91 / 6e-20 AT2G31730 117 / 2e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10024071 [exp] 81 / 4e-18 AT2G31730 116 / 3e-34 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G098900.2 pacid=42799896 polypeptide=Potri.010G098901.1.p locus=Potri.010G098900 ID=Potri.010G098900.2.v4.1 annot-version=v4.1 ATGGCTCAAGAATGCACCGAGAGCTCTGTGGCAATCTCTCCCTCTATCCCACTAAACTGGTGGGATCTTCACCATGCAAATTCACTCTCTTCGTTGACCA ATACCAGTCCATGGCACCAGTCAAACCCCAGTTCTAACTCCTCTTGCGAAGAGGATCTTTCTATGTCTACATCCTTTACTAATGCTTCTAATCACTCTGG ACTAACCGTCGAGTCCGCTCGCCAACTCGTCGAGCCCGCTTCATCAACCGAATTGATGGGCGAGCATGCTTATAGCCATCTCTGGAGCCAAATTCTACTA GGAGTTGGGAGCAATGAAGAGTTGGACAACAGTCAAGATGTTGGAGAAAACTTACTCGACGCTTTGTCATCCAAGACTTCTAGTACTATGTCATCTGGGA TATTTGGACCAGCTTGTGATTACTTCAAGAGAATGGACAGCGATTGGGAATTCACGAACCCAGCATCCCTTAACAACTTTGAAAAGCATCTAAACGGTTT CAGTGAGAGCTTGATTGGAGGTGGAAGGTTCAACAAGTTGGTCAGCCAATTGTCTATTGCCCCGCCAAACCCGGAAGTAAGACGTCAACTATTCGATTCA CTGACATGCAACATATCGTTGAGCCCTTCTGTAAATCATGATTACTCCGGCCAGCATCAGACTTACAGCAATTCCACACCATGTTTGATGGGAGAAAGCA GAAATTCAGATTTTCAGTCATGCTATGGCCATGATCTAAAAGTAGAGAATGAGCATCGTGAAAGACCTACGGCTCCATTTAATAGCAACGGTGTTGGATA CCACATTGGCCTTAACAGCTCAGTGGTAGGAGATAACAGCAAATACTACCATGGCATGCCTGATGCTACAAACAGAAGTGCAAGAAATTTTGCAGATGCC TTAACGTTTAGTAATCGATTAAGGAAGCCACTGATTGATATTCAAGTGCCTAAGCCTTGCTTTAAATCGATCAATTTATCTGATAGTAGAAACCAAGGAC TCCAAACTTCTTCTCCGTCAGGGAAAGGACATGGAACAACAAATGAAAGGAAGAGGAGAAGATCTGAAGAAACTTCAGAGACGGCTGCGAAGAAAGCTAA GCATGAGAGCTCTACAGTTTCATCCGTAAAGATTCAAGCACCAAAAGTGAAGCTTTCGGAAAGAGTCACGGCCCTTCAACAAATTGTTTCGCCATTTGGG AGGACTGATACAGCCTCGGTGCTATATGAAGCAATTCAATACATTAAATACTTGCAAGAGCAAGTGCAGCTATTCAGCAATCCTTACATGAAGACTACGA ACTCACACAAGGATCCTTGGGCAGGCTTGGATAGAAAAGACAAGGGAGATGCAAGAATTGATCTCAGAAGCAGAGGTCTTTGTTTAGTTCCTATTTCATG TACCCCTCAAATTTATCACGACAACGCAGGATCAGATTACTGGACACCAACTTATAGAGAGTGTCTATATAGGTGA
AA sequence Show only first row Show all	>Potri.010G098900.2 pacid=42799896 polypeptide=Potri.010G098901.1.p locus=Potri.010G098900 ID=Potri.010G098900.2.v4.1 annot-version=v4.1 MAQECTESSVAISPSIPLNWWDLHHANSLSSLTNTSPWHQSNPSSNSSCEEDLSMSTSFTNASNHSGLTVESARQLVEPASSTELMGEHAYSHLWSQILL GVGSNEELDNSQDVGENLLDALSSKTSSTMSSGIFGPACDYFKRMDSDWEFTNPASLNNFEKHLNGFSESLIGGGRFNKLVSQLSIAPPNPEVRRQLFDS LTCNISLSPSVNHDYSGQHQTYSNSTPCLMGESRNSDFQSCYGHDLKVENEHRERPTAPFNSNGVGYHIGLNSSVVGDNSKYYHGMPDATNRSARNFADA LTFSNRLRKPLIDIQVPKPCFKSINLSDSRNQGLQTSSPSGKGHGTTNERKRRRSEETSETAAKKAKHESSTVSSVKIQAPKVKLSERVTALQQIVSPFG RTDTASVLYEAIQYIKYLQEQVQLFSNPYMKTTNSHKDPWAGLDRKDKGDARIDLRSRGLCLVPISCTPQIYHDNAGSDYWTPTYRECLYR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31050	bHLH	bHLH111	basic helix-loop-helix (bHLH) ...		Potri.010G098900 [exp]	0	1
AT5G38450		CYP735A1	"cytochrome P450, family 735, ...		Potri.004G100400 [exp]	4.00	0.8412	CYP735A6,CYP735.2
AT4G22790			MATE efflux family protein (.1...		Potri.003G116700 [exp]	6.70	0.8403
AT3G15990		SULTR3;4	sulfate transporter 3;4 (.1)		Potri.001G179400 [exp]	8.48	0.8000	SULTR3.7
AT2G24130			Leucine-rich receptor-like pro...		Potri.003G184100 [exp]	8.83	0.8149
AT3G22890		APS1	ATP sulfurylase 1 (.1)		Potri.010G081200 [exp]	9.21	0.7639
AT3G61980			serine protease inhibitor, Kaz...		Potri.014G108900 [exp]	11.87	0.8722
AT3G04945		LCR18	low-molecular-weight cysteine-...		Potri.013G032700 [exp]	12.64	0.8546
AT3G27150			Galactose oxidase/kelch repeat...		Potri.017G069500 [exp]	17.20	0.8579
AT2G19800		MIOX2	myo-inositol oxygenase 2 (.1)		Potri.017G100200 [exp]	21.21	0.8497
AT1G76900	TUB	AtTLP1	tubby like protein 1 (.1.2)		Potri.002G068200 [exp]	23.83	0.7699

Compare expression of checked genes

Potri.010G098900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.