Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02090 1061 / 0 CHA19, ETL1, CHR19 CHROMATIN REMODELING 19, SNF2 domain-containing protein / helicase domain-containing protein (.1) AT2G13370 300 / 1e-86 CHR5 chromatin remodeling 5 (.1) AT3G06010 275 / 3e-79 ATCHR12 Homeotic gene regulator (.1) AT2G25170 275 / 2e-78 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) AT5G19310 272 / 3e-78 Homeotic gene regulator (.1) AT4G31900 272 / 8e-78 PKR2 PICKLE RELATED 2, chromatin remodeling factor, putative (.1.2) AT2G28290 263 / 3e-74 CHR3, SYD SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT5G44800 256 / 1e-71 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1) AT2G44980 241 / 2e-68 ASG3 ALTERED SEED GERMINATION 3, SNF2 domain-containing protein / helicase domain-containing protein (.1.2) AT2G18760 236 / 2e-65 CHR8 chromatin remodeling 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G253400 [exp] 292 / 5e-84 AT2G13370 2206 / 0.0 chromatin remodeling 5 (.1) Potri.007G026700 [exp] 278 / 2e-82 AT5G66750 993 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.009G047800 [exp] 286 / 4e-82 AT2G13370 2129 / 0.0 chromatin remodeling 5 (.1) Potri.019G129900 [exp] 277 / 4e-82 AT5G66750 1047 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.018G021100 [exp] 272 / 2e-77 AT2G25170 1818 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.010G091200 [exp] 268 / 2e-76 AT3G06010 1408 / 0.0 Homeotic gene regulator (.1) Potri.001G123400 [exp] 269 / 4e-76 AT5G44800 1996 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.006G262200 [exp] 268 / 4e-76 AT2G25170 1826 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.008G149900 [exp] 265 / 1e-75 AT3G06010 1485 / 0.0 Homeotic gene regulator (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039140 [exp] 1077 / 0 AT2G02090 1107 / 0.0 CHROMATIN REMODELING 19, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10013792 [exp] 1044 / 0 AT2G02090 1034 / 0.0 CHROMATIN REMODELING 19, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10009711 [exp] 294 / 1e-84 AT2G13370 2115 / 0.0 chromatin remodeling 5 (.1) Lus10022423 [exp] 294 / 1e-84 AT2G13370 2250 / 0.0 chromatin remodeling 5 (.1) Lus10041735 [exp] 275 / 7e-81 AT5G66750 1069 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10041019 [exp] 276 / 7e-79 AT2G25170 1776 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10005339 [exp] 274 / 6e-78 AT2G25170 1787 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10024019 [exp] 265 / 4e-77 AT5G66750 1034 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10012798 [exp] 266 / 4e-75 AT2G28290 1549 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10038363 [exp] 264 / 2e-74 AT5G44800 1916 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit
Representative CDS sequence Show only first row Show all	>Potri.010G099000.3 pacid=42798544 polypeptide=Potri.010G099000.3.p locus=Potri.010G099000 ID=Potri.010G099000.3.v4.1 annot-version=v4.1 ATGAAGCGCGATTTCGACGAAATTTCAGACGACGAGTGGGCTAACCACTCCTTCAAGCCCTCTCGCATTCTCACAACCACACAAAACGGCAAACACAAAT CCAATTCGTCTTCTTCCGCTTCTTTTCGTCCTCCTTTAGAATCCTTCGCTTTCAAAAAACCACAACAAAATTCATTTAGCAGCGTTGTCGACGATTGTGT CCAAGTCACCGAGCATTTCAATTTGGAGGACGATGACGTGGAGGAGGAGGAGGAGACTACGAGGCCATCAGCGGTGAATCGTGGTCGTCGATTCGTGGTC GATGATGATGATGAGGATGAAGAGGTGGACGAGCGAGAGCGCGGCGGGGATTTGGCGGAGGTTTATGATATAAAATCGAGCGACGAGGAGTGGGAGGAGG AGGAATTGGCGGTGGAAGATGATGATTTGGTGGGCAAAGCATTGCAGAAATGCTCTAAAATATCGGTGGAGTTGAAGAGGGAGCTGTACGGCTCTGGAGT GACCTCGTGCGACCGGTACGCCGAGGTGGAGGCTTCTTCAGTCAAGATTGTTACTCAGGATGATATCGATGCAGCGTGTGCAGTGGCGGATTCAGATTTC CAGCCTGTCCTCAAGCCATACCAGCTGGTTGGTGTCAATTTTCTTCTTCTGCTGCACCGAAAGGGCATTGGAGGAGCCATATTGGCAGATGAGATGGGTC TTGGGAAGACCATTCAGGCAATTACATACTTGACGTTGTTGAAATACTTACACAATGACCCTGGTCCACATTTAATTGTGTGTCCTGCCTCCCTGTTGGA AAACTGGGAAAGAGAACTGAAAAAGTGGTGTCCATCATTTTCTGTACTCCAGTATCATGGGGCTACCAGATCTGCCTATTCAAAAGAGTTGGGTTCATTG GCCAAAGCTGGGTTGCCACCTCCTTTTAATGTGCTCCTTGTCTGTTACTCACTTTTTGAGCGGCATAGTGCTCAGCAGAAAGATGATCGTAAAATTCTGA AACGTTGGCAATGGAGCTGTGTTATAATGGATGAGGCTCATGCTTTGAAGGATAAGAACAGCTATAGGTGGAAAAACCTGATGTCAGTTGCAAGGAATGC AAACCAGCGTTTGATGCTCACTGGGACGCCTCTGCAGAATGATTTACATGAGCTATGGTCATTGTTGGAGTTTATGATGCCTGATCTTTTTGCTACCGAG GACGAGGACTTGAAAAAGCTATTGAATGCAGAAGATGGAGATTTAATTGGTCGTATGAAGTCTATTTTGGGACCATTCATCTTGAGGCGTTTAAAATCTG ATGTCATGCAACAACTAGTTCCAAAGATACAGCGGGTTGAGTATGTTTCAATGGAAAAGCATCAGGAGTATGCTTACAAAGAAGCAATAGAGGAATATCG TGCAGTTTCGCATGCTCGTATTGCAAAGGTTTCAGATGGTGACCCAAATACTATCACTGGAGTTCTTCCTCGGCGGCAGATCTCAAATTATTTTGTTCAG TTCCGCAAGATTGCCAATCATCCATTATTGGTGAGGCGAATTTACAGTGATGAGGATGTCATTCGTTTTGCCAAAAAGTTACATCCAATGGGTGCATTTG GCTTTGAATGTACCTTGGAAAGGGTAATAGAGGAACTAAAAAGCTACAACGACTTTTCTATTCACCGGCTTTTACTCTATCATGATATAAATGAGAAAAA AGGAATCCTTTCAGACAAGTATGTTATGCTTTCAGCTAAATGTCGGGCATTAGCTGAACTTCTTCCTGACCTGAAGAAGTGTGGGCATCGGGTTCTGATT TTTAGCCAGTGGACTTCGATGCTAGACATCCTAGAGTGGACTTTGGATGTACTTGGGGTTACATATAGAAGACTTGATGGAAGTACTCAGGTGACAGAGA GGCAGGCCATAGTGGATGCTTTCAATAATGACACCTCCATATCTGCATGTTTGCTGTCCACTAGAGCTGGAGGTCAGGGTTTGAACTTGACAGGAGCTGA TACTGTAATTATCCACGATTTGGATTTCAACCCACAAATTGATAGGCAGGCAGAAGATCGTTGTCATCGCATTGGCCAAACAAAGCCTGTCACCATATAC AGGCTGGTGACCAAGGGCACGGTTGATGAGAATGTTTATGAGATAGCAAAACGGAAGCTAGTGTTGGATGCTGCAGTGCTCGAGTCTGGCGTGGAGGTAA ATAATGAGGGAGACACGTTAACTATGGGGGAGATATTATCATCACTTTTGATGGTATAG
AA sequence Show only first row Show all	>Potri.010G099000.3 pacid=42798544 polypeptide=Potri.010G099000.3.p locus=Potri.010G099000 ID=Potri.010G099000.3.v4.1 annot-version=v4.1 MKRDFDEISDDEWANHSFKPSRILTTTQNGKHKSNSSSSASFRPPLESFAFKKPQQNSFSSVVDDCVQVTEHFNLEDDDVEEEEETTRPSAVNRGRRFVV DDDDEDEEVDERERGGDLAEVYDIKSSDEEWEEEELAVEDDDLVGKALQKCSKISVELKRELYGSGVTSCDRYAEVEASSVKIVTQDDIDAACAVADSDF QPVLKPYQLVGVNFLLLLHRKGIGGAILADEMGLGKTIQAITYLTLLKYLHNDPGPHLIVCPASLLENWERELKKWCPSFSVLQYHGATRSAYSKELGSL AKAGLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWQWSCVIMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDLFATE DEDLKKLLNAEDGDLIGRMKSILGPFILRRLKSDVMQQLVPKIQRVEYVSMEKHQEYAYKEAIEEYRAVSHARIAKVSDGDPNTITGVLPRRQISNYFVQ FRKIANHPLLVRRIYSDEDVIRFAKKLHPMGAFGFECTLERVIEELKSYNDFSIHRLLLYHDINEKKGILSDKYVMLSAKCRALAELLPDLKKCGHRVLI FSQWTSMLDILEWTLDVLGVTYRRLDGSTQVTERQAIVDAFNNDTSISACLLSTRAGGQGLNLTGADTVIIHDLDFNPQIDRQAEDRCHRIGQTKPVTIY RLVTKGTVDENVYEIAKRKLVLDAAVLESGVEVNNEGDTLTMGEILSSLLMV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G02090		CHA19, ETL1, CH...	CHROMATIN REMODELING 19, SNF2 ...		Potri.010G099000 [exp]	0	1
AT2G39760		ATBPM3	BTB/POZ/MATH-domains containin...		Potri.008G059600 [exp]	1.73	0.8708
AT1G09710	MYB		Homeodomain-like superfamily p...		Potri.002G106500 [exp]	9.69	0.8712
AT1G04530		TPR4	tetratricopeptide repeat 4, Te...		Potri.010G065400 [exp]	14.96	0.8230
AT1G48110		ECT7	evolutionarily conserved C-ter...		Potri.010G152300 [exp]	15.49	0.8555
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Potri.009G041600 [exp]	16.73	0.8706
AT4G00310		MEE46, EDA8	MATERNAL EFFECT EMBRYO ARREST ...		Potri.014G087500 [exp]	17.32	0.7927
AT5G63120			P-loop containing nucleoside t...		Potri.015G083000 [exp]	18.16	0.8398
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Potri.002G044000 [exp]	18.33	0.8400
					Potri.005G009001 [exp]	18.70	0.8669
AT2G44200			CBF1-interacting co-repressor ...		Potri.006G000200 [exp]	19.26	0.8566

Compare expression of checked genes

Potri.010G099000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.