Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02070 385 / 3e-126 C2H2ZnF ATIDD5 indeterminate(ID)-domain 5 (.1) AT1G14580 317 / 8e-102 C2H2ZnF C2H2-like zinc finger protein (.1.2) AT2G02080 318 / 1e-101 C2H2ZnF ATIDD4 indeterminate(ID)-domain 4 (.1), indeterminate(ID)-domain 4 (.2) AT5G66730 296 / 2e-93 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) AT1G03840 295 / 9e-93 C2H2ZnF MGP Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) AT3G50700 292 / 2e-92 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1) AT1G55110 291 / 9e-92 C2H2ZnF ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7, ATIDD7, ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7 indeterminate(ID)-domain 7 (.1) AT5G44160 289 / 4e-91 C2H2ZnF AtIDD8, NUC nutcracker, INDETERMINATE DOMAIN 8, C2H2-like zinc finger protein (.1) AT5G03150 288 / 4e-90 C2H2ZnF JKD JACKDAW, C2H2-like zinc finger protein (.1) AT3G45260 286 / 4e-90 C2H2ZnF C2H2-like zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G142400 [exp] 904 / 0 AT2G02070 409 / 2e-135 indeterminate(ID)-domain 5 (.1) Potri.010G099100 [exp] 496 / 3e-170 AT2G02070 369 / 4e-121 indeterminate(ID)-domain 5 (.1) Potri.008G142500 [exp] 458 / 9e-156 AT2G02070 407 / 6e-136 indeterminate(ID)-domain 5 (.1) Potri.006G129300 [exp] 306 / 5e-97 AT5G03150 371 / 1e-123 JACKDAW, C2H2-like zinc finger protein (.1) Potri.016G088500 [exp] 303 / 7e-96 AT5G03150 353 / 1e-116 JACKDAW, C2H2-like zinc finger protein (.1) Potri.017G017100 [exp] 300 / 3e-95 AT1G03840 459 / 1e-158 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.005G215100 [exp] 298 / 2e-94 AT1G03840 328 / 1e-107 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.002G048000 [exp] 298 / 2e-94 AT4G02670 362 / 6e-122 indeterminate(ID)-domain 12 (.1) Potri.007G135000 [exp] 297 / 5e-94 AT1G03840 435 / 3e-149 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035092 [exp] 313 / 5e-99 AT2G02070 334 / 3e-107 indeterminate(ID)-domain 5 (.1) Lus10010820 [exp] 287 / 8e-93 AT3G50700 349 / 2e-119 indeterminate(ID)-domain 2 (.1) Lus10008396 [exp] 294 / 6e-92 AT3G13810 339 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10007168 [exp] 293 / 1e-91 AT5G66730 386 / 2e-129 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Lus10041723 [exp] 291 / 3e-91 AT3G50700 489 / 1e-170 indeterminate(ID)-domain 2 (.1) Lus10026497 [exp] 290 / 3e-91 AT5G03150 384 / 2e-129 JACKDAW, C2H2-like zinc finger protein (.1) Lus10019927 [exp] 290 / 3e-91 AT5G03150 386 / 6e-130 JACKDAW, C2H2-like zinc finger protein (.1) Lus10004840 [exp] 288 / 2e-89 AT3G13810 337 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10041356 [exp] 291 / 3e-87 AT1G03840 332 / 2e-103 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Lus10004497 [exp] 276 / 5e-86 AT1G55110 341 / 5e-113 indeterminate(ID)-domain 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF12171 [poplar] [flax] zf-C2H2_jaz Zinc-finger double-stranded RNA-binding
Representative CDS sequence Show only first row Show all	>Potri.010G099200.7 pacid=42798248 polypeptide=Potri.010G099200.7.p locus=Potri.010G099200 ID=Potri.010G099200.7.v4.1 annot-version=v4.1 ATGGCTGCTTCTTCTTCATCGGCGCCTTTTTTTGGAATTAGGGAAGAAGAACAAAACCAGCAGATGAAACAACAGCATTCCTCAACTCCAACTTCATCTT CAGCTCAGGCTCCACCGCCACAGAAGAAAAAGAGAAACCAACCTGGAACACCAAATCCAGACGCAGAGGTGATAGCACTATCTCCCAAGACCCTAATGGC AACAAACAGGTTCATATGTGAGGTATGCAACAAAGGGTTCCAAAGGGAGCAAAATCTACAGCTCCACAGAAGAGGACATAACCTGCCTTGGAAGCTAAAG CAGAAGACTACAAAAGAAGTGAGGAGGAAGGTTTATCTGTGCCCCGAACCCACATGCGTCCACCATGAGCCTTCTAGAGCTCTTGGTGATCTTACTGGAA TCAAAAAGCACTACTCAAGAAAACATGGTGAGAAGAAATGGAAGTGTGAGAAGTGCTCAAAAAAATATGCTGTCCAGTCTGATTGGAAAGCCCATTCTAA GACTTGTGGCACTAGAGAATACAGATGTGACTGTGGCACTCTCTTCTCAAGGCGTGACAGCTTTATCACTCACAGGGCATTCTGTGATGCGCTGGCTCAA GAAAGTGCAAGAAACCCTCCTACCAACTTGAACACAATTGGAAGCCATCTGTATGGAAGTAGCAACATGACCTTAGGCTTATCTCAAGTAGGAACTCAAA TCTCCTCATTACAAGACCACAACAACCAGTCTACTGACATTTTACGACTTGGTGGCGGTGGTGCCCGGACTGGACAATTCGATCATCTTCTCCCTTCATC AATTGGTTCATCGTCGTTTCGACCTCCACAGCAAATGCCCTCACCTGCTTTCTTCATGCAAGAACCAAACCAGAATTATCATGATGAAAACCAATCTCAG CAAGACTTGTTGCAAAATAAGCCGTTCCATCATGGACTGATGCAATTTGCTGATATTCACAACACCACAGGCAACCCTCCCTCTGCTGGCAATCTGTTCA ACCTCAGCTTTCTTTCCAATAGTAGCACCGCAAGCAGCATTTCCAACAGCAACAATGCAAACAATTCCAACAGCAACCTACCAACTTCAGGATTGCTAAT GCCCAGTCATTTCAACAACCAAAATGGTGTTGGTGGTGGTGAAGGGAGTAATATCTTCTCAAATAATGTAATGGGTAATCAAATGACCTCCGGTGTCCCT TCTCTCTACAGCTCTTCGGTTCAGAATGATAACATGGTCTCTCATATGTCTGCTACTGCGCTGCTTCAAAAGGCTGCTCAAATGGGTTCAAGTTCAAGCA ACAACAGTGCCTCATTACTTAGAAGTTTTGGTAGCTCTTCCTCAAGTGGTAACAAATCAGATAGGCAACTTGTTGGTGGGAACTTTAGTGGCATGTTCAG CGAAAACGAGAATAATCTTCATGACCTAATGAACTCATTTGCTCCTGGGAATTCCTCCATGTTTGGTTCCGGACATGCACAAGAAAACCCCTATGGTGGA TATACTGCAAGCAGGACAAGTTTGGAGCAAGAAAAGCAGCACCACGGCCCAAATTTTGGCAACACTAGTATGGATGAAGCAAAGTTGCACCAAAGTCTCA ATGCAAGCATTGGTGGGTCTGATAGATTGACAAGAGACTTTCTTGGTGTTGGTCCTCAAATAGTGAGAAGCATGAGTGGATCATCAGGGTTTTCACAGAG AGAAAAACAGCAGCAGCCACAGCGTCAGCATCATGGCATGGATATGGGTGGCTCCTCCTTGGATTCAGAGAGACATAACACTAATATTTCTGCGGCGCCG ACAAGCCAGCCTTTCGGAGGAAATGGGAGTTTTCAGTGA
AA sequence Show only first row Show all	>Potri.010G099200.7 pacid=42798248 polypeptide=Potri.010G099200.7.p locus=Potri.010G099200 ID=Potri.010G099200.7.v4.1 annot-version=v4.1 MAASSSSAPFFGIREEEQNQQMKQQHSSTPTSSSAQAPPPQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLK QKTTKEVRRKVYLCPEPTCVHHEPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQ ESARNPPTNLNTIGSHLYGSSNMTLGLSQVGTQISSLQDHNNQSTDILRLGGGGARTGQFDHLLPSSIGSSSFRPPQQMPSPAFFMQEPNQNYHDENQSQ QDLLQNKPFHHGLMQFADIHNTTGNPPSAGNLFNLSFLSNSSTASSISNSNNANNSNSNLPTSGLLMPSHFNNQNGVGGGEGSNIFSNNVMGNQMTSGVP SLYSSSVQNDNMVSHMSATALLQKAAQMGSSSSNNSASLLRSFGSSSSSGNKSDRQLVGGNFSGMFSENENNLHDLMNSFAPGNSSMFGSGHAQENPYGG YTASRTSLEQEKQHHGPNFGNTSMDEAKLHQSLNASIGGSDRLTRDFLGVGPQIVRSMSGSSGFSQREKQQQPQRQHHGMDMGGSSLDSERHNTNISAAP TSQPFGGNGSFQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G02070	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1...		Potri.010G099200 [exp]	0	1
AT5G08650			Small GTP-binding protein (.1)		Potri.001G305300 [exp]	3.16	0.9702
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.002G068400 [exp]	4.00	0.9456
AT5G03900			Iron-sulphur cluster biosynthe...		Potri.004G090400 [exp]	4.69	0.9673
AT5G53390			O-acyltransferase (WSD1-like) ...		Potri.019G070975 [exp]	6.16	0.9440
AT1G74850		PDE343, PTAC2	PIGMENT DEFECTIVE 343, plastid...		Potri.015G069100 [exp]	6.24	0.9636
AT5G53170		FTSH11	FTSH protease 11 (.1)		Potri.012G000700 [exp]	7.48	0.9605
AT4G36390			Methylthiotransferase (.1)		Potri.007G018500 [exp]	9.53	0.9546
AT1G80770		PDE318	pigment defective 318, P-loop ...		Potri.002G134900 [exp]	12.24	0.9236
AT5G12890			UDP-Glycosyltransferase superf...		Potri.001G016300 [exp]	12.36	0.9310
AT5G49580			Chaperone DnaJ-domain superfam...		Potri.010G148900 [exp]	12.60	0.9097

Compare expression of checked genes

Potri.010G099200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.