Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75010 656 / 0 ARC3 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3, GTP binding (.1) AT1G60890 82 / 6e-16 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT2G26420 75 / 1e-13 PIP5K3 1-phosphatidylinositol-4-phosphate 5-kinase 3 (.1) AT1G21980 73 / 6e-13 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT1G77740 72 / 9e-13 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT2G35170 70 / 3e-12 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT1G10900 70 / 4e-12 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT4G17080 64 / 2e-10 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) AT3G07960 64 / 3e-10 PIP5K6 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT3G09920 62 / 1e-09 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G142301 [exp] 76 / 3e-17 AT1G75010 71 / 1e-16 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3, GTP binding (.1) Potri.005G172800 [exp] 81 / 3e-15 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.002G088100 [exp] 79 / 7e-15 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.003G019100 [exp] 74 / 2e-13 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.001G211200 [exp] 72 / 7e-13 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.003G085000 [exp] 66 / 5e-11 AT4G17080 417 / 5e-141 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.003G196000 [exp] 66 / 6e-11 AT3G07960 1094 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.014G052300 [exp] 65 / 8e-11 AT4G17080 348 / 2e-115 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1) Potri.001G149400 [exp] 66 / 9e-11 AT4G17080 395 / 2e-132 Histone H3 K4-specific methyltransferase SET7/9 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035091 [exp] 787 / 0 AT1G75010 559 / 0.0 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3, GTP binding (.1) Lus10031930 [exp] 772 / 0 AT1G75010 549 / 0.0 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3, GTP binding (.1) Lus10000187 [exp] 271 / 3e-84 AT1G75010 185 / 5e-53 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3, GTP binding (.1) Lus10020821 [exp] 78 / 1e-14 AT1G60890 935 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10029661 [exp] 77 / 3e-14 AT1G21980 1115 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10012689 [exp] 75 / 1e-13 AT1G60890 932 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10018200 [exp] 74 / 4e-13 AT1G21980 1172 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10025636 [exp] 74 / 5e-13 AT1G21980 1170 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10015456 [exp] 69 / 9e-12 AT1G60890 1036 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10024151 [exp] 68 / 2e-11 AT3G07960 918 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0251 [poplar] [flax] MORN PF02493 [poplar] [flax] MORN MORN repeat
Representative CDS sequence Show only first row Show all	>Potri.010G099300.1 pacid=42798085 polypeptide=Potri.010G099300.1.p locus=Potri.010G099300 ID=Potri.010G099300.1.v4.1 annot-version=v4.1 ATGGAGGTTCCTGTATTGACGAGCTTTCACTCCGTTTCTCTCTCCTCCAAAACCGCCTTTTACATGGATCGCTGCAGCTTCTTTCGTAAGAGATTGAATT GCAAAAAGCGTTGTCGTCTTCGAATTAAAGTGAGCTCAGAGAAGGATGATGATGATGGTTCATTGAGTTTTAAAAGCGACGCTGTTAATTTTTGCGGGGG AGGACAATCCGGCGATTTAGTAGATGTAATAAGCATTGGCAGCAGGAAGGACGCCGTTGTTGATTTCTGTTTCGACTCGCCTTTACAGTTATCGTCTTCG CTCCTCCGATTTTGGAATATTCAGACCAAAGATTCCGTGACTGTTCAGTTGCAAGAAAGGGTTCTTGAAAAAGATGTTAATCCAAGGGTTATGGAAGTTT CGCAGTTTCTAAAGTTCCCTTCAAAGGCCATTGTCCTTGTGGCTAGTGCAGGATATGGCTTGGATCATATTACAGCAATTGATATTCTTAAAACAAGGAG GTTCAGGAATGCATTTACTGTCGCTATTTTTCTAAAGCCTTTCAGTTTTGAAGGACAAAGGCGCCAAGATGAGGTGAAAGATTTGGTAGGAAAGCTTCAA GAGTATACAAATTTCTGTATTGATATTGACACTGATGCACTCCTAAAAAAGGACTTGGTCACTCTAGATGAGGCCTTGAAGTCTGCAAACAGTGCTGTTT TATTGGCCATGAATGCCATCTCTATTCTTATCTCGGAGACGCACCAGAAAATAATTGATGCAGTGCATGATAATGTGAAAGAACTTAAAGTTTCAGAAGT TATAAAAATACTGGAGAGCTACAAAGAAGCAAAAATTGGATTTGGCACCGGTAACAGCATTAGAAGTTCAATTATACAGGCTCTATATGATTGCCCTTTC ATTGGTGCCGGTGTTAAGGAATTAAATGGAATTGTTATATGCATTATTGCAAGTTCCGTTCTTATGGACGACAAAGATGTACATGCCTCTCTGCTTACTT TCCGACGAACAGCAAATTACACGGGTGAAATCATTATTTGTACATCTCATGAGCCTAATCTGGAGCCCAACATGCTGGTAACAACAGTTGTTATTGTAGG CTGTATTGAGCAACAGGCTCCTCAGAAAAGTAGCATATTCTCCAAACTGGCCCAGCATTTCCCTTTTGTTTTTAAACTTCTGAGGATATCCCACCAAAAA CCTTGTGGCAACAAAGGAAAAGATATGGAAGATGCACAGCTATCGAAGGGGATAGATTCACCAGACTCTGGTTTGGTGGAAAATACAAGTTCTGTAGAAG GTTTAGTCAATGGTGTTGACAAGCACTCCAAGGACTCTGAGAGGGTATCAGGCGGTGATTATGTTGACATTTATAGTTCAAGGAATTACAACAATGGAGT TGAAGAAGATGGGGTTGGCCTATTAGAAGAAGATACGATAGAGTCTTCTAATTTTTACAATCAAAACATGGAAGAAACTCCTGCTTTCCAAAGGGAACCG CTCATTAGTAGGAATATGGGGCCAGGATATCAGATTGCACAGGAGTGGGCCAAAGAAAGGGCCGGAGCCACTCCAGTGCTTGATGATATGAGCGTCTTCC AACTTCCAGTTGGTGTAAGACCTTCAGAAGAGTCAAAAGGCAGTCTGAACATCTCATATGCCACAGAACTCTCAGAACCAAAAACTGAGGATGATTTCAA AGGCCAGACACTTGTTAATTCAACTATCCCTTCTTGGGGTGATGCAGGTTTTATAGCAGTGAGGGATTTTTATAATAATGCATCCACACTGTTAAAGGGT AAAAATCCTGATGTGCTTAAAAAGCAAGGAATTCTTTCTGCTCGTGCTGCATCTATGCTGGAAGCTGAGCGAGATTCACCAAAAAAGTGGAGTCCTATTA TGGAAATGCAGTACAGGGGAGGCGTCTACAGGGGGCGGTGCCAAGGAGGTCTGCCAGAAGGGAAGGGCCGTCTGATCCTTCAGGATGGAAGCATGTATGA TGGCATGTGGCGCTATGGTAAGAGATCAGGCCCAGGTACATTCTACTTTAGCAATGGGGATGTATTCCAGGGATCATGGAGGGATGATGTAATGCATGGC AAGGGCTGGTTTTATTTTCATTCTGGGGATCGATGGTTTGCAAACTTTTGGAAGGGAAAGGCCAATGGTGAAAGCCGCTTCTATTCAAAGTTTGGTGATG TATTTTTTGGCCATTTCCAAGATGGATGGCGACATGGCCACTTCCTTTGTATTGATGTTGATGGAGCAAGGTATGTTGAGACGTGGGATGAGGGTGTTCT TGTAAGCCGTGAGCAATTGGACTCGGATAATGGTGGTGGATAA
AA sequence Show only first row Show all	>Potri.010G099300.1 pacid=42798085 polypeptide=Potri.010G099300.1.p locus=Potri.010G099300 ID=Potri.010G099300.1.v4.1 annot-version=v4.1 MEVPVLTSFHSVSLSSKTAFYMDRCSFFRKRLNCKKRCRLRIKVSSEKDDDDGSLSFKSDAVNFCGGGQSGDLVDVISIGSRKDAVVDFCFDSPLQLSSS LLRFWNIQTKDSVTVQLQERVLEKDVNPRVMEVSQFLKFPSKAIVLVASAGYGLDHITAIDILKTRRFRNAFTVAIFLKPFSFEGQRRQDEVKDLVGKLQ EYTNFCIDIDTDALLKKDLVTLDEALKSANSAVLLAMNAISILISETHQKIIDAVHDNVKELKVSEVIKILESYKEAKIGFGTGNSIRSSIIQALYDCPF IGAGVKELNGIVICIIASSVLMDDKDVHASLLTFRRTANYTGEIIICTSHEPNLEPNMLVTTVVIVGCIEQQAPQKSSIFSKLAQHFPFVFKLLRISHQK PCGNKGKDMEDAQLSKGIDSPDSGLVENTSSVEGLVNGVDKHSKDSERVSGGDYVDIYSSRNYNNGVEEDGVGLLEEDTIESSNFYNQNMEETPAFQREP LISRNMGPGYQIAQEWAKERAGATPVLDDMSVFQLPVGVRPSEESKGSLNISYATELSEPKTEDDFKGQTLVNSTIPSWGDAGFIAVRDFYNNASTLLKG KNPDVLKKQGILSARAASMLEAERDSPKKWSPIMEMQYRGGVYRGRCQGGLPEGKGRLILQDGSMYDGMWRYGKRSGPGTFYFSNGDVFQGSWRDDVMHG KGWFYFHSGDRWFANFWKGKANGESRFYSKFGDVFFGHFQDGWRHGHFLCIDVDGARYVETWDEGVLVSREQLDSDNGGG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G75010		ARC3	ACCUMULATION AND REPLICATION O...		Potri.010G099300 [exp]	0	1
AT4G25620			hydroxyproline-rich glycoprote...		Potri.012G144200 [exp]	2.44	0.8455
AT1G14205			Ribosomal L18p/L5e family prot...		Potri.008G087100 [exp]	6.92	0.8351
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.002G072900 [exp]	7.48	0.8349	SEU.1
AT4G03020			transducin family protein / WD...		Potri.014G136000 [exp]	12.00	0.8244
AT5G22640		EMB1211	embryo defective 1211, MORN (M...		Potri.009G149100 [exp]	12.28	0.8455
AT2G25640			SPOC domain / Transcription el...		Potri.018G125500 [exp]	12.64	0.8343
AT2G47350			HIT zinc finger ;PAPA-1-like c...		Potri.013G008300 [exp]	13.71	0.8392
AT5G63520			unknown protein		Potri.015G098700 [exp]	14.28	0.8085
AT1G21650		SECA2	Preprotein translocase SecA fa...		Potri.002G078000 [exp]	14.66	0.8391
AT5G08470		EMB2817, PEX1	EMBRYO DEFECTIVE 2817, peroxis...		Potri.001G174100 [exp]	15.49	0.8175

Compare expression of checked genes

Potri.010G099300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.