Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14590 490 / 7e-174 Nucleotide-diphospho-sugar transferase family protein (.1) AT2G02061 448 / 6e-157 Nucleotide-diphospho-sugar transferase family protein (.1) AT5G44820 379 / 3e-130 Nucleotide-diphospho-sugar transferase family protein (.1) AT4G19970 375 / 3e-124 unknown protein AT4G15970 320 / 2e-107 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G28710 222 / 3e-69 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) AT1G28700 219 / 3e-68 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G28695 207 / 1e-63 Nucleotide-diphospho-sugar transferase family protein (.1) AT5G40900 187 / 4e-56 Nucleotide-diphospho-sugar transferase family protein (.1) AT4G01220 55 / 3e-08 MGP4 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G142200 [exp] 621 / 0 AT1G14590 454 / 2e-160 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.012G037300 [exp] 411 / 5e-143 AT1G14590 404 / 1e-140 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.015G029200 [exp] 400 / 2e-138 AT1G14590 405 / 8e-141 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.002G139800 [exp] 238 / 6e-75 AT1G28710 337 / 1e-114 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.012G112600 [exp] 232 / 3e-73 AT1G28710 306 / 6e-104 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.015G110600 [exp] 232 / 4e-73 AT1G28710 300 / 2e-101 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.014G051600 [exp] 234 / 5e-73 AT1G28710 344 / 5e-117 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.002G166000 [exp] 54 / 5e-08 AT4G01220 524 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Potri.008G186800 [exp] 48 / 1e-05 AT1G70630 668 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034422 [exp] 446 / 1e-156 AT1G14590 411 / 2e-143 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10019139 [exp] 441 / 4e-155 AT1G14590 406 / 8e-142 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031927 [exp] 414 / 1e-145 AT1G14590 386 / 7e-135 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031330 [exp] 373 / 2e-127 AT2G02061 359 / 4e-122 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031903 [exp] 371 / 1e-126 AT2G02061 361 / 1e-122 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041977 [exp] 310 / 4e-103 AT1G14590 296 / 9e-98 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10017981 [exp] 293 / 3e-96 AT1G14590 303 / 9e-101 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041973 [exp] 293 / 3e-96 AT1G14590 302 / 3e-100 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041976 [exp] 283 / 3e-92 AT1G14590 292 / 4e-96 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10032455 [exp] 214 / 6e-66 AT1G28710 259 / 3e-84 Nucleotide-diphospho-sugar transferase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF03407 [poplar] [flax] Nucleotid_trans Nucleotide-diphospho-sugar transferase
Representative CDS sequence Show only first row Show all	>Potri.010G099400.1 pacid=42798445 polypeptide=Potri.010G099400.1.p locus=Potri.010G099400 ID=Potri.010G099400.1.v4.1 annot-version=v4.1 ATGAATACAGTTCCATTGCTCAGGCCCCAATCCACCACCAGGAGACAGTTGCCGGTCACCACCAAACAACTCCTCCGCACCAGATTCACCCCTAGCTTCC CTGCCTCCACCTCCATGTTTCCTGAATCCAACGTCCCCCGCGCCGTACTCGTCTTCGTTGCCATTTCCGTCTCCGTTTTGCTCCTATACGGAGCCGCAGA TTCTCTCCGCTTCCAATCCTCCTCCTCTGGTTACTCCTTTAACATCTTCCCTTCTCTCCGCAACAGCAACAACAGCGATTCTAAATTATCAATTAATGAT GATGGTGATGATGATTATAAGCTGGAGAAAGTATTGAAAGAAGCTGCGATGGAAGATAAGACAGTAATAATTGCTACATTAAATGAAGCATGGGCAGCTC CAAATACAATTATCGATCTGTTCCTTGAAAGCTTTAGAATTGGGCAGGGTACGCGTAGGCTTTTGAATCATTTGGTGATTGTTGCGCTGGATCGAAAGGC ATATAAGCGATGTATGGAATTTCATGCTCATTGCTTTGCTCTTGTTACTCAAGGACTTGATTTTCATGATGAGGCTTATTTTATGACCCCTGCGTATTTG GAGATGATGTGGAGACGCATTGATTTCTTGCGCTCTGTTCTTCAGATGGGCTATAACTTTGTTTTCACGGATGCTGATATTATGTGGTTCAGGGACCCCT TTCCACGGTTTTATTTGGATGCTGATTTCCAGATTGCATGTGATCATTTCTTGGGCAACTCAAGTGATATACAAAACAGACCCAATGGAGGTTTTAACTA TGTAAAGTCCAACAACCGCACGATAGAATTTTACAAGTTCTGGTATTCTTCACGGGAGACCTATCCTGGATACCATGATCAGGATGTCCTTAATTTTATC AAATTTGATCCTTTCATTGAGGACCTTGGATTGAAGATGAGATTCTTGGACACTGCTTTCTTTGGGGGCCTTTGCGAACCTAGCAAGGATTTGAATTTAG TTTGTACAATGCATGCAAATTGCTGTTATGGTTTGGATAGCAAGCTTCATGATCTTAGAATTATGCTTCAGGATTGGAAAACTTTTTTATCTTTGCCACC AGCCTTGAAAAGATCATCGTCTATGCTGTGGACGGTCCCCCAAAACTGCAGTCTTAATTCTCTCCGTCGATATGATTCTCCGGAAAAGAGTGTTCAACAA AGTTTGCAACAATGA
AA sequence Show only first row Show all	>Potri.010G099400.1 pacid=42798445 polypeptide=Potri.010G099400.1.p locus=Potri.010G099400 ID=Potri.010G099400.1.v4.1 annot-version=v4.1 MNTVPLLRPQSTTRRQLPVTTKQLLRTRFTPSFPASTSMFPESNVPRAVLVFVAISVSVLLLYGAADSLRFQSSSSGYSFNIFPSLRNSNNSDSKLSIND DGDDDYKLEKVLKEAAMEDKTVIIATLNEAWAAPNTIIDLFLESFRIGQGTRRLLNHLVIVALDRKAYKRCMEFHAHCFALVTQGLDFHDEAYFMTPAYL EMMWRRIDFLRSVLQMGYNFVFTDADIMWFRDPFPRFYLDADFQIACDHFLGNSSDIQNRPNGGFNYVKSNNRTIEFYKFWYSSRETYPGYHDQDVLNFI KFDPFIEDLGLKMRFLDTAFFGGLCEPSKDLNLVCTMHANCCYGLDSKLHDLRIMLQDWKTFLSLPPALKRSSSMLWTVPQNCSLNSLRRYDSPEKSVQQ SLQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14590			Nucleotide-diphospho-sugar tra...		Potri.010G099400 [exp]	0	1
AT3G46960			RNA helicase, ATP-dependent, S...		Potri.009G041200 [exp]	6.00	0.7602
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Potri.003G188700 [exp]	9.43	0.7626	SDG906,SUVH3.3
AT4G22360			SWIB complex BAF60b domain-con...		Potri.006G010700 [exp]	12.48	0.7352
AT5G49660		XIP1	XYLEM INTERMIXED WITH PHLOEM 1...		Potri.002G111700 [exp]	15.29	0.7517
AT1G76410		ATL8	RING/U-box superfamily protein...		Potri.005G255200 [exp]	16.43	0.7352
AT5G58003		CPL4	C-terminal domain phosphatase-...		Potri.018G108300 [exp]	27.20	0.7428
AT4G02715			unknown protein		Potri.002G050900 [exp]	36.33	0.7072
AT5G35910			Polynucleotidyl transferase, r...		Potri.019G038701 [exp]	42.80	0.7253
AT4G08900		ARGAH1	arginine amidohydrolase 1, arg...		Potri.014G067700 [exp]	50.41	0.6734	Pt-PAG1.3
AT4G18375			RNA-binding KH domain-containi...		Potri.004G066100 [exp]	52.99	0.7041

Compare expression of checked genes

Potri.010G099400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.