Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09290 311 / 1e-104 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023158 [exp] 302 / 5e-100 AT1G09290 325 / 4e-109 unknown protein Lus10012754 [exp] 75 / 1e-15 AT1G09290 104 / 7e-27 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02926 [poplar] [flax] THUMP THUMP domain
Representative CDS sequence Show only first row Show all	>Potri.010G099500.1 pacid=42797110 polypeptide=Potri.010G099500.1.p locus=Potri.010G099500 ID=Potri.010G099500.1.v4.1 annot-version=v4.1 ATGGCTGCACTATCTGTTAACATAGAAGTTGGGGAAGAAGAAAAGGAAAAAATGGAATCGAAATCAGAAGCAGCAGCAGAGAAAGAAAGAATGAAGCCAT GGGAACAGCACGCAGGGGTGATAAACATGCCTCGTTTCGATTACAACGCACCTTCTGCCCTTCTTCATCATTCTCACTCTGGCTTCCTCATCACCTGCTC CATCAAAAGGGAGAAAAGTGCTACAAAAGAAGCCATGTCAATCCTTGAAAAGTATGTTGAATCCTACAATAGTGGAAGCTCTGAAAGCTTGGAAAGATCT GATGAAAATAAAAGCGCTAAGAAAAGGAGAATATTGACTGATGAAACCAGTGCGAAATGTGATGAAGATGTGAAAAGTGAAAGCATTATTGACGAGATTA GTGGTGGACCTGCAAAAGATGATTGTCAATCTCTTTCAAAAGCAGATGCACCTGTGGAAAGAGGTTTTGTTCTTTCACTAGTGAAGCTGACAGGAAGTGG TTTGGTTCTCCTTACCTTTCCCAGAGAAAATCCCTCTGTCACCGCAGACGTTGTATCAAATATTTTCCAATGTCTGGAATCTGGGATTTTAAAGTCACCT CTCTGGTGTCATCGCATTTTCCCTATTCAAGCTACTTGTTTGTTAATTGAGAAGGAGCTGCGAGCAGTTGTGTCAAAGCTTGTTCTTCAATTCATCAATG ACAAACAAAATAAACTTGCACGACCTATTAAGTTTGCAGTTGGATATAACAGAAGAGGAATTGAAGAGACATGCATGAAGAATTTGAAAGATAATCCAAA AGATTCTGATCCATTTCCCATGTTGGACCGGAGCAAATGCTTTGATGTTGTGGCTTCTGCAATAAAAGATGCTGTACCAGAGTCAGCTGTTGATCTCAAA TCACCAGAGCTCTCTGTTCTCGTGGAGTTGTTGCCCCTTTCTGGAGTACCTAATGGATCCTTGGTTGCTGCTGTCTCTGTTCTTCCTCAAAACCTTGTAA GTGTAAAGCCGCGGCTCTGCATTAAGCCACTAATTTCTGATGCGAATGCGCGGAATAGGAGTTAA
AA sequence Show only first row Show all	>Potri.010G099500.1 pacid=42797110 polypeptide=Potri.010G099500.1.p locus=Potri.010G099500 ID=Potri.010G099500.1.v4.1 annot-version=v4.1 MAALSVNIEVGEEEKEKMESKSEAAAEKERMKPWEQHAGVINMPRFDYNAPSALLHHSHSGFLITCSIKREKSATKEAMSILEKYVESYNSGSSESLERS DENKSAKKRRILTDETSAKCDEDVKSESIIDEISGGPAKDDCQSLSKADAPVERGFVLSLVKLTGSGLVLLTFPRENPSVTADVVSNIFQCLESGILKSP LWCHRIFPIQATCLLIEKELRAVVSKLVLQFINDKQNKLARPIKFAVGYNRRGIEETCMKNLKDNPKDSDPFPMLDRSKCFDVVASAIKDAVPESAVDLK SPELSVLVELLPLSGVPNGSLVAAVSVLPQNLVSVKPRLCIKPLISDANARNRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09290			unknown protein		Potri.010G099500 [exp]	0	1
AT5G66240			Transducin/WD40 repeat-like su...		Potri.005G114600 [exp]	1.00	0.7776
AT4G37210			Tetratricopeptide repeat (TPR)...		Potri.007G034200 [exp]	2.82	0.7472
AT5G51570			SPFH/Band 7/PHB domain-contain...		Potri.015G130600 [exp]	6.48	0.6659
AT5G04130		GYRB2	DNA GYRASE B2 (.1.2)		Potri.006G039400 [exp]	8.66	0.7512
AT3G20740		FIE1, FIS3, FIE	FERTILIZATION-INDEPENDENT ENDO...		Potri.001G417300 [exp]	9.79	0.7539	FIE.1,PGE901
AT5G11860		SSP5	SCP1-like small phosphatase 5 ...		Potri.003G173700 [exp]	12.96	0.7160
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Potri.009G126200 [exp]	15.65	0.7087	Pt-GAS41.2
AT4G27650		PEL1	PELOTA, Eukaryotic release fac...		Potri.005G204500 [exp]	17.60	0.6968	PEL1.2
AT5G51140			Pseudouridine synthase family ...		Potri.015G101300 [exp]	27.01	0.7241
AT5G65620			Zincin-like metalloproteases f...		Potri.007G004600 [exp]	31.22	0.6768

Compare expression of checked genes

Potri.010G099500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.