Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02050 159 / 2e-52 NADH-ubiquinone oxidoreductase B18 subunit, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G141900 [exp] 202 / 2e-69 AT2G02050 159 / 3e-52 NADH-ubiquinone oxidoreductase B18 subunit, putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035094 [exp] 179 / 3e-60 AT2G02050 161 / 4e-53 NADH-ubiquinone oxidoreductase B18 subunit, putative (.1) Lus10019137 [exp] 178 / 7e-60 AT2G02050 163 / 5e-54 NADH-ubiquinone oxidoreductase B18 subunit, putative (.1) Lus10031932 [exp] 179 / 2e-59 AT2G02050 164 / 4e-53 NADH-ubiquinone oxidoreductase B18 subunit, putative (.1) Lus10034424 [exp] 176 / 6e-59 AT2G02050 162 / 3e-53 NADH-ubiquinone oxidoreductase B18 subunit, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0351 [poplar] [flax] CHCH PF05676 [poplar] [flax] NDUF_B7 NADH-ubiquinone oxidoreductase B18 subunit (NDUFB7)
Representative CDS sequence Show only first row Show all	>Potri.010G099900.1 pacid=42797959 polypeptide=Potri.010G099900.1.p locus=Potri.010G099900 ID=Potri.010G099900.1.v4.1 annot-version=v4.1 ATGGAATTGCCAGGATCATCAAAGCCAATGATAGCAACGCAGGAAGAAATGGTTGAGGCAAGGGTCCCAATTCCATACAGAGACCAATGCGCCCATTTGC TGATCCCACTCAACAAGTGCAGGCAATCTGAGTTCTTTCTTCCATGGAAGTGTGAGAACGAGCGCCATGTTTATGAGAAGTGTGAGTATGAGCTTGTCAT GGAGAGAATGCTTCAGATGCAGAAGATCCGTGAAGCTGAGGCCAAACTCAAACAATCACACAAGCAAGGAACCATCCCTCTCATCCCCAAGACTGCAAAT GCCTAG
AA sequence Show only first row Show all	>Potri.010G099900.1 pacid=42797959 polypeptide=Potri.010G099900.1.p locus=Potri.010G099900 ID=Potri.010G099900.1.v4.1 annot-version=v4.1 MELPGSSKPMIATQEEMVEARVPIPYRDQCAHLLIPLNKCRQSEFFLPWKCENERHVYEKCEYELVMERMLQMQKIREAEAKLKQSHKQGTIPLIPKTAN A

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G02050			NADH-ubiquinone oxidoreductase...		Potri.010G099900 [exp]	0	1
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Potri.010G162800 [exp]	2.23	0.9071
AT5G58290		RPT3	regulatory particle triple-A A...		Potri.006G031000 [exp]	2.44	0.9022	RPT1.3
AT1G34430		EMB3003	embryo defective 3003, 2-oxoac...		Potri.013G114300 [exp]	7.14	0.8551
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Potri.008G107800 [exp]	7.34	0.8474	Pt-SAR1.3
AT2G40765			unknown protein		Potri.019G059500 [exp]	9.59	0.8868
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Potri.005G229000 [exp]	9.64	0.8903	APFI.2
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Potri.018G030900 [exp]	15.62	0.8293
AT2G46540			unknown protein		Potri.002G173101 [exp]	15.87	0.8737
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Potri.001G369000 [exp]	16.52	0.8820
AT4G38510			ATPase, V1 complex, subunit B ...		Potri.009G137800 [exp]	17.02	0.8307

Compare expression of checked genes

Potri.010G099900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.