Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	NTR1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02040 897 / 0 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 788 / 0 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT3G54140 716 / 0 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT2G02020 716 / 0 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT5G01180 698 / 0 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT1G32450 483 / 7e-165 NRT1.5 nitrate transporter 1.5 (.1) AT5G46050 482 / 9e-165 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) AT2G40460 473 / 2e-161 Major facilitator superfamily protein (.1) AT5G46040 462 / 5e-157 Major facilitator superfamily protein (.1) AT1G68570 459 / 1e-155 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G120000 [exp] 974 / 0 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.009G042400 [exp] 698 / 0 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111800 [exp] 698 / 0 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 697 / 0 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111900 [exp] 697 / 0 AT3G54140 798 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 695 / 0 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.002G258900 [exp] 534 / 0 AT5G46050 730 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.008G170100 [exp] 528 / 0 AT5G46050 816 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.010G068100 [exp] 527 / 0 AT5G46050 829 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040099 [exp] 992 / 0 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10030947 [exp] 987 / 0 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10011055 [exp] 947 / 0 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10000670 [exp] 941 / 0 AT2G02040 849 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040100 [exp] 917 / 0 AT2G02040 835 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10018207 [exp] 699 / 0 AT5G01180 818 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10035516 [exp] 696 / 0 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10021132 [exp] 684 / 0 AT3G54140 814 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Lus10040698 [exp] 603 / 0 AT5G01180 709 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10011786 [exp] 516 / 8e-178 AT5G46050 831 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.010G100200.1 pacid=42800197 polypeptide=Potri.010G100200.1.p locus=Potri.010G100200 ID=Potri.010G100200.1.v4.1 annot-version=v4.1 ATGGGTTCGGTGGAGGAACATTCATCGCTCTTGGAAGATGGACTCATTCAACAGGATGAAAGCAATGGACTCTACACAGGAGATGGCTCAGTTGACATTA ATGGGAACCCTGTCCTTAAGCAGAAAACTGGAAACTGGAAAGCATGCCCTTTCATACTGGGTACTGAATGTTGTGAACGCCTGGCCTACTATGGGATTGC TACTAATCTCGTCACTTACCTTACCAAGAAGCTACATGAAGGAAATGTGTCGGCTGCAAGAAATGTTACCACCTGGTCAGGGACATGCTATCTTACACCC CTCATCGGAGCTGTATTAGCAGATACTTGTTGGGGAAGATATTGGACTATTGCTGCTTTCTCCTCAATTTACTTCATTGGAATGTGTGCGTTGACTCTCT CAGCATCTATTCCTGCATTAAAGCCAGCTGAATGCGTAGGTTCTCTGTGCCCTCCAGCAACTCCAGCTCAGTATGCAGTATTCTTTTTTGGCCTCTATCT GATTGCGCTTGGGACGGGTGGCATCAAACCATGTGTTTCATCCTTTGGGGCAGATCAATTTGATGACACTGATCCCAAGGAACGGGTAAAGAAGGGATCT TTCTTCAATTGGTTCTATTTTTCAATCAATATTGGTGCTCTTATATCAAGTAGTTTTCTGGTATATATTCAAGACAATGCCGGTTGGGGACTAGGATTTG GAATTCCTGCACTGTTCATGGGCATAGCTATTGCTAGCTTCTTTTCAGGCACACCCCTTTACAGATTTCAAAGACCAGGGGGGAGCCCTATTACAAGGAT GTGCCAAGTTTTGGTTGCATCATTCCATAAGTGGAATCTGGAGGTTCCTCTAGACAGTAGCCTCCTGTATGAAACACAAGACAAACACTCTGCCATTGAA GGAAGCCGGAAACTGGTGCACAGCGATGAACTAAAGTGCCTTGATAAAGCTGCTGTGCTGTCAGAGGCTGAGATGAAAAGTGGGGACTTCCCCAACCCTT GGAGGCTTTGTACTGTCACGCAGGTGGAGGAATTGAAGATTTTGATCCGCATGTTTCCAATCTGGGCTACAGGAATTGTCTTTTCCGCTGTGTATGCCCA GATGTCTACTATGTTTGTGGAACAAGGGATGCTGATGGACACGACAATTGGTTCTTTCACAATTCCTCCAGCATCTCTGTCATCCTTTGATGTTATTAGT GTTATTTGCTGGGTGCCAATCTATGATAGGATTGTTGTTCCCATTGCAAGGAAGTTCACAGGAAAAGAGAGGGGCTTCTCAGATTTGCAGCGTATGGGAA TTGGCCTGTTCATTTCAGTGTTATCAATGACAGCTGCTGCTTTGGTGGAGATTAAGCGCCTACAGCTTGCGAAAGAGCTTGGCTTGGCTGGTGAAGCTGT TGCAGTGCCTATCAGTATTTTTTGGCAGATCCCCCAATATATGTTGGTAGGTGCTTCAGAAGTTTTTACATTCATTGGTCAGATTGAATTCTTCTATGAA GAATCTCCAGATGCAATGCGGAGTTTATGCAGTGCGTTGTCACTCCTGACTACGTCTTTGGGTAATTACTTGAGCTCTTTTATTCTGACTATGGTAACTT ACTTCACAACCACGGGTGGGAAGCCAGGATGGATCCCCGATAACTTGAATGAGGGCCACCTCGATTATTTCTTCTGGCTTTTAGCTGGACTCAGCGTTCT CAACATGCTGGTCTATGTTTTCTGTGCGAGGAAATATAAGCAGAAGGCCTCCTAA
AA sequence Show only first row Show all	>Potri.010G100200.1 pacid=42800197 polypeptide=Potri.010G100200.1.p locus=Potri.010G100200 ID=Potri.010G100200.1.v4.1 annot-version=v4.1 MGSVEEHSSLLEDGLIQQDESNGLYTGDGSVDINGNPVLKQKTGNWKACPFILGTECCERLAYYGIATNLVTYLTKKLHEGNVSAARNVTTWSGTCYLTP LIGAVLADTCWGRYWTIAAFSSIYFIGMCALTLSASIPALKPAECVGSLCPPATPAQYAVFFFGLYLIALGTGGIKPCVSSFGADQFDDTDPKERVKKGS FFNWFYFSINIGALISSSFLVYIQDNAGWGLGFGIPALFMGIAIASFFSGTPLYRFQRPGGSPITRMCQVLVASFHKWNLEVPLDSSLLYETQDKHSAIE GSRKLVHSDELKCLDKAAVLSEAEMKSGDFPNPWRLCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTMFVEQGMLMDTTIGSFTIPPASLSSFDVIS VICWVPIYDRIVVPIARKFTGKERGFSDLQRMGIGLFISVLSMTAAALVEIKRLQLAKELGLAGEAVAVPISIFWQIPQYMLVGASEVFTFIGQIEFFYE ESPDAMRSLCSALSLLTTSLGNYLSSFILTMVTYFTTTGGKPGWIPDNLNEGHLDYFFWLLAGLSVLNMLVYVFCARKYKQKAS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Potri.010G100200 [exp]	0	1	NTR1.3
AT5G02420			unknown protein		Potri.010G231600 [exp]	1.00	0.8234
AT2G40810		ATATG18C	homolog of yeast autophagy 18C...		Potri.019G062800 [exp]	2.00	0.7286
AT4G29160		SNF7.1	SNF7 family protein (.1.2.3)		Potri.018G069900 [exp]	5.47	0.7363
AT4G35860		ATGB2, AtRABB1b...	GTP-binding 2 (.1.2)		Potri.009G159600 [exp]	5.91	0.7072	Pt-ATGB2.1
AT5G16880			Target of Myb protein 1 (.1.2....		Potri.019G050000 [exp]	7.21	0.6921
AT2G46150			Late embryogenesis abundant (L...		Potri.003G133400 [exp]	8.48	0.7026
AT5G08560			transducin family protein / WD...		Potri.005G206600 [exp]	9.48	0.6470
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Potri.001G073900 [exp]	10.09	0.6454
AT1G29800			RING/FYVE/PHD-type zinc finger...		Potri.011G071900 [exp]	11.61	0.7187
AT2G33700			Protein phosphatase 2C family ...		Potri.002G007500 [exp]	12.48	0.6515

Compare expression of checked genes

Potri.010G100200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.