Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30050 518 / 0 transducin family protein / WD-40 repeat family protein (.1) AT3G01340 511 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G02730 70 / 2e-13 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT2G26060 67 / 2e-12 EMB1345 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G64350 62 / 1e-10 SEH1H Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 61 / 3e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 54 / 7e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 53 / 9e-08 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT3G44530 52 / 3e-07 HIRA homolog of histone chaperone HIRA (.1.2) AT2G32700 52 / 3e-07 MUM1, LUH MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G068900 [exp] 596 / 0 AT2G30050 526 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.008G141300 [exp] 533 / 0 AT2G30050 465 / 2e-167 transducin family protein / WD-40 repeat family protein (.1) Potri.001G221000 [exp] 75 / 5e-15 AT2G26060 523 / 0.0 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G138300 [exp] 73 / 2e-14 AT1G64350 457 / 4e-163 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G212800 [exp] 69 / 3e-13 AT2G26060 530 / 0.0 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G051900 [exp] 64 / 3e-11 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 59 / 9e-10 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G184900 [exp] 58 / 3e-09 AT3G44530 1365 / 0.0 homolog of histone chaperone HIRA (.1.2) Potri.009G144800 [exp] 58 / 4e-09 AT3G44530 1398 / 0.0 homolog of histone chaperone HIRA (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037571 [exp] 563 / 0 AT2G30050 523 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10011429 [exp] 562 / 0 AT2G30050 525 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10001904 [exp] 77 / 6e-16 AT1G64350 442 / 3e-157 Transducin/WD40 repeat-like superfamily protein (.1) Lus10003896 [exp] 75 / 5e-15 AT1G64350 434 / 4e-154 Transducin/WD40 repeat-like superfamily protein (.1) Lus10021365 [exp] 66 / 4e-12 AT2G26060 482 / 2e-172 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10017045 [exp] 64 / 2e-11 AT2G26060 486 / 5e-174 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10014674 [exp] 58 / 2e-09 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10042333 [exp] 57 / 3e-09 AT3G18140 572 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10018458 [exp] 58 / 5e-09 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 58 / 5e-09 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.010G100400.1 pacid=42799537 polypeptide=Potri.010G100400.1.p locus=Potri.010G100400 ID=Potri.010G100400.1.v4.1 annot-version=v4.1 ATGCCGTCTCAGAAAATTGAAACTGGCCATGAGGACACTGTCCATGATGTTGCAATGGATTATTATGGCAAGCGGATTGCAACTGCATCATCGGATCATT CAATCAAGATAGTTGGGGTGAACAACAATTCTTCTCAGCATCTTGCAAATCTGACCGGGCACCAAGGCCCAGTTTGGCAAGTAGCTTGGGCTCACCCGAA ATTTGGCTCGTTGCTTGCTTCATGTTCTTATGACGGGCGAGTCATAATTTGGAAGGAGGGTAATCAGAATGATTGGATCCAAGCACATGTTTTTGACGAT CACAAATCATCTGTCAATTCCATTGCTTGGGCACCTCATGAACTGGGCCTTTGTTTGGCGTGCGGTTCATCTGATGGGAATATATCTGTTTTTACTGCAC GAGCTGATGGCAATTGGGACACATCGAGGATTGATCAAGCTCACCCTGCTGGTGTAACTTCTGTTTCATGGGCCCCATCCACGGCACCCGGTGCCCTTGT TGGTTCTGGTTTGCTTGACCCTGCTCAGAAGCTTTGCTCAGGTGGTTGTGATAATACTGTCAAAGTGTGGAAACTGTATAATGGGAATTGGAAGCTGGAT TGCTTTCCAGCTCTTAATATGCATGCTGATTGGGTGAGGGATGTTGCTTGGGCACCCAACTTGGGCCTTCCAAAATCTACTATTGCTAGTGCCTCGCAGG ATGGGAAGGTTATTATATGGACTGTGGCAAAGGAAGGTGATCAATGGGAAGGTAAGGTCTTGCATGATTTCAAGGCTCCTGTTTGGAGGGTCTCGTGGTC ACTAACTGGAAACATACTGGCTGTTGCTGATGGGAACAGCAATGTAACATTGTGGAAAGAAGCTGTAGATGGGGAGTGGCAACAGGTGACAACTGTTGAT GCCTAG
AA sequence Show only first row Show all	>Potri.010G100400.1 pacid=42799537 polypeptide=Potri.010G100400.1.p locus=Potri.010G100400 ID=Potri.010G100400.1.v4.1 annot-version=v4.1 MPSQKIETGHEDTVHDVAMDYYGKRIATASSDHSIKIVGVNNNSSQHLANLTGHQGPVWQVAWAHPKFGSLLASCSYDGRVIIWKEGNQNDWIQAHVFDD HKSSVNSIAWAPHELGLCLACGSSDGNISVFTARADGNWDTSRIDQAHPAGVTSVSWAPSTAPGALVGSGLLDPAQKLCSGGCDNTVKVWKLYNGNWKLD CFPALNMHADWVRDVAWAPNLGLPKSTIASASQDGKVIIWTVAKEGDQWEGKVLHDFKAPVWRVSWSLTGNILAVADGNSNVTLWKEAVDGEWQQVTTVD A

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30050			transducin family protein / WD...		Potri.010G100400 [exp]	0	1
AT2G30050			transducin family protein / WD...		Potri.015G068900 [exp]	1.41	0.7305
AT5G05987		PRA1.A2	prenylated RAB acceptor 1.A2 (...		Potri.010G198000 [exp]	1.73	0.7323
AT5G55940		EMB2731	embryo defective 2731, Unchara...		Potri.001G370200 [exp]	9.21	0.7155
AT1G08780		PFD4, PDF4, AIP...	PREFOLDIN 4, ABI3-interacting ...		Potri.005G054500 [exp]	12.48	0.7004
AT3G27430		PBB1	N-terminal nucleophile aminohy...		Potri.004G066000 [exp]	12.84	0.7272	Pt-PBB1.2
AT1G13560		AAPT1, ATAAPT1	aminoalcoholphosphotransferase...		Potri.010G133800 [exp]	13.41	0.6624	Pt-AAPT1.1
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Potri.004G153400 [exp]	14.00	0.6929	Pt-ACT2.2
AT5G09310			unknown protein		Potri.005G063100 [exp]	16.24	0.6682
AT1G02130		ARA5, AtRABD2a,...	ARABIDOPSIS THALIANA RAB D2A, ...		Potri.001G152800 [exp]	17.20	0.6817	Pt-RAB1.5
AT1G79010			Alpha-helical ferredoxin (.1)		Potri.009G116000 [exp]	17.54	0.7191

Compare expression of checked genes

Potri.010G100400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.