Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14630 166 / 1e-50 unknown protein AT2G01990 160 / 9e-49 unknown protein AT5G48720 54 / 2e-08 XRI1, XRI x-ray induced transcript 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G140900 [exp] 396 / 9e-140 AT2G01990 148 / 3e-43 unknown protein Potri.014G190000 [exp] 60 / 2e-10 AT5G48720 226 / 2e-73 x-ray induced transcript 1 (.1.2) Potri.002G244000 [exp] 59 / 5e-10 AT5G48720 281 / 2e-94 x-ray induced transcript 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039139 [exp] 117 / 2e-30 AT1G14630 120 / 3e-32 unknown protein Lus10013793 [exp] 112 / 5e-29 AT2G01990 118 / 1e-31 unknown protein Lus10025920 [exp] 44 / 0.0001 AT5G48720 237 / 2e-77 x-ray induced transcript 1 (.1.2) Lus10038181 [exp] 41 / 0.0006 AT5G48720 253 / 4e-83 x-ray induced transcript 1 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G100700.1 pacid=42799229 polypeptide=Potri.010G100700.1.p locus=Potri.010G100700 ID=Potri.010G100700.1.v4.1 annot-version=v4.1 ATGGCTTATTACCATAGTAGTAGTAGTAGTAACCTCTCTTCCCTAGGCTGGGATCTTCAAAACCTTGGAGTTCTCAACGCAGACATGACTTTAGCCATGG ATAGAAGAACTTCGCCGTTTTTCTCTTCTCTAGAGTCTGATTTCTCGACCGGGTACTTAGAAGATGCTTTGCTTGAATTTAATGAGCGATCCAAACGAAG ACGCTTGCTGCTGTTCTCTACTGAGCATGATCATGCCCATGATCAATACGAAAAATCAAATGACCTACCTGAGAGCAACTGGAATGAAGAAAACTTTGAC GACTGGGAATTGATGTCAGAGAATTTTAGTTGCTTGAGCCACATTACTGGTATTCGTGGAACTTCAGATGAGCCCATGACCACGTCGATGAGCAATACTA GCGAGGAAGCAAATGTCATATCGGAGATAAAAACACCAGAAGAGGGAATATCAGCCCCTGAAACTCTTGATTATTCATCATCATCTTCTTACAAAGATTT GGCTGGCACAAACTCCATTTTTGAAAAAGACAACATCCCTCACTCTTCTGATGATGACGGGGAGAAGAGAAAGAGGAGGTTGGGAACAAGGGTGGTGTAT CCATTTGCACTAGTGAAGCCAGGAGGTTTAGAAGGGGACATGACCATAAACGATATCAATGAGAGGATCTTAATGCCACCAACAAGGCCGGTAAGACATC CGGTAGGGGATTTTGCTTGTAAGCCATGTGTATCTGCTGATGGCCCCGGTCTTTCTGGGAAAGCTGTGGTGGCCCTTACAAGAGTCCACACGCAAGGGAG AGGCACAATCACTATTATTAGAACCAAAGGTTAA
AA sequence Show only first row Show all	>Potri.010G100700.1 pacid=42799229 polypeptide=Potri.010G100700.1.p locus=Potri.010G100700 ID=Potri.010G100700.1.v4.1 annot-version=v4.1 MAYYHSSSSSNLSSLGWDLQNLGVLNADMTLAMDRRTSPFFSSLESDFSTGYLEDALLEFNERSKRRRLLLFSTEHDHAHDQYEKSNDLPESNWNEENFD DWELMSENFSCLSHITGIRGTSDEPMTTSMSNTSEEANVISEIKTPEEGISAPETLDYSSSSSYKDLAGTNSIFEKDNIPHSSDDDGEKRKRRLGTRVVY PFALVKPGGLEGDMTINDINERILMPPTRPVRHPVGDFACKPCVSADGPGLSGKAVVALTRVHTQGRGTITIIRTKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14630			unknown protein		Potri.010G100700 [exp]	0	1
AT4G38220		AQI	aquaporin interactor, Peptidas...		Potri.004G208100 [exp]	1.00	0.7779
AT1G21920			Histone H3 K4-specific methylt...		Potri.002G085900 [exp]	2.00	0.6742
AT5G13300		AGD3, VAN3, SFC	ASCULAR NETWORK DEFECTIVE 3, S...		Potri.003G163200 [exp]	5.19	0.6940
AT1G62870			unknown protein		Potri.003G115900 [exp]	8.71	0.7180
AT5G14980			alpha/beta-Hydrolases superfam...		Potri.001G466700 [exp]	10.48	0.6125
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Potri.011G071800 [exp]	24.24	0.6595
AT1G21080			DNAJ heat shock N-terminal dom...		Potri.005G260400 [exp]	24.49	0.6198
AT5G13140			Pollen Ole e 1 allergen and ex...		Potri.003G167100 [exp]	27.62	0.6537
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Potri.004G062400 [exp]	32.46	0.6258
AT2G30933			Carbohydrate-binding X8 domain...		Potri.005G003500 [exp]	37.21	0.6722

Compare expression of checked genes

Potri.010G100700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.