Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01950 1510 / 0 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT1G55610 952 / 0 BRL1 BRI1 like (.1.2) AT3G13380 942 / 0 BRL3 BRI1-like 3 (.1) AT4G39400 835 / 0 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT5G07280 591 / 0 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G17230 498 / 1e-157 Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 486 / 1e-151 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G65700 473 / 4e-149 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G44700 479 / 5e-149 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT3G49670 471 / 1e-148 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G140500 [exp] 2006 / 0 AT2G01950 1535 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.001G472900 [exp] 933 / 0 AT1G55610 1485 / 0.0 BRI1 like (.1.2) Potri.011G169600 [exp] 921 / 0 AT1G55610 1500 / 0.0 BRI1 like (.1.2) Potri.007G078100 [exp] 816 / 0 AT4G39400 1426 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.005G086500 [exp] 807 / 0 AT4G39400 1398 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.015G141200 [exp] 548 / 2e-174 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.012G139000 [exp] 547 / 4e-174 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G139700 [exp] 485 / 8e-153 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G009200 [exp] 479 / 3e-151 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039132 [exp] 1578 / 0 AT2G01950 1503 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10038726 [exp] 1570 / 0 AT2G01950 1501 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10033533 [exp] 862 / 0 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10020835 [exp] 855 / 0 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10006817 [exp] 854 / 0 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10005784 [exp] 853 / 0 AT4G39400 1361 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10014996 [exp] 501 / 4e-157 AT5G07280 1264 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10016395 [exp] 487 / 1e-153 AT1G72300 1170 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10019722 [exp] 481 / 2e-151 AT1G72300 1189 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10005403 [exp] 465 / 9e-146 AT5G53890 1248 / 0.0 phytosylfokine-alpha receptor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.010G101100.1 pacid=42796882 polypeptide=Potri.010G101100.1.p locus=Potri.010G101100 ID=Potri.010G101100.1.v4.1 annot-version=v4.1 ATGGAGAGCAACCCGGTTCAGCTTTTCCATCATCTTGCACTTGCGCTTCTTCTCTTCATGTTTTCTGTTTCGGTTTCTGTGACCGAGCAAGGTCTCGTTC CATCGATAAGGACGGATGCTGCAGCCCTTCTTTCATTCAAGAAGATGATTCAAAATGACCCACAAGGAGTTTTATCAGGATGGCAGATTAATCGAAGTCC ATGCGTCTGGTATGGTGTTTCTTGCACTCTTGGAAGAGTCACTCATCTTGATCTTACTGGATGTTCTCTTGCTGGCATTATCTCTTTCGATCCTTTATCT TCTCTTGATATGTTATCTGCTTTGAATTTGTCTTTGAATTTGTTTACTGTAAGTTCCACTTCTTTGCTTCACCTCCCATATGCACTCCAGCAGCTTCAAT TATGTTATACCGGACTTGAAGGTCCGGTTCCTGAGAATTTCTTCTCCAAGAACCCGAATCTTGTTTACGCAAACCTTTCTCATAATAATTTATCAGAGTT GTTACCAGATGATCTCTTATTGAACTCCGATAAAGTTCAGACACTTGACCTTTCTTATAACAACTTTACAGGGTCCTTTTCAGGTTTAAAAATCGAGAAT TCCTGCAACTCCTTGTCGCAGCTTGATCTATCTGGAAACCATTTAATGGATTCCATTCCTCCTACCCTTTCAAATTGTACAAATCTAAAAAATTTGAATC TTTCATTCAATATGCTCACAGGAGAGATCCCAAGGTCTTTTGGTAAACTAAGTAGTTTACAGAGATTGGATCTCTCTCACAATCATATCACTGGTTGGAT TCCTTCTGAGTTGGGAAATGCATGTAATTCACTTCTAGAACTCAAGATTTCCTATAACAACATTTCAGGCCCGGTTCCTGTCTCCTTGTCCCCTTGTTCT TTGCTTCAAACTCTTGATTTGTCTAACAACAATATATCAGGGCCCTTTCCAGATTCTATCCTTCAAAATCTTGCTTCATTGGAGAGATTGTTGCTAAGTT ACAACCTAATATCTGGATCATTTCCAGCTTCCATTTCATACTGCAAGAGTTTAAAAATTGTGGATCTTAGTTCCAATAGATTTTCTGGTACCATCCCACC AGATATATGCCCAGGTGCAGCCTCTCTTGAGGAGCTGAGATTGCCAGATAATCTCATTATCGGAGAAATCCCAGCACAGCTATCACAATGTTCCAAGCTG AAGACACTTGATTTCAGCATTAACTTCCTCAATGGTTCGATCCCTGCTGAGCTTGGAAAGCTTGAGAACCTGGAGCAGCTAATAGCATGGTATAATAGCT TGGAAGGGAAGATTCCACCGGAATTGGGGAAATGCAGAAACCTGAAGGATCTTATTCTCAATAATAACAACCTAAGCGGCATAATCCCAGTTGAATTATT CCGTTGCACTAATCTTGAATGGATCTCTCTCACAAGCAATCAATTCACAGGTGAAATCCCACGGGAATTCGGCCTTCTGTCAAGGTTAGCAGTCTTGCAG CTTGCGAACAATAGTTTGAGTGGAGAGATACCGACAGAGCTAGGAAATTGCAGCAGCTTGGTTTGGTTAGACTTGAACAGCAACAAGCTCACTGGTGAAA TCCCACCTCGACTTGGCCGGCAGCTGGGGGCAAAAGCATTGAGTGGAATTTTGTCCGGAAACACTTTGGTGTTTGTTCGGAACGTGGGAAATTCATGCAA AGGAGTTGGAGGTTTGCTGGAATTTGCTGGTATCAAAGCCGAAAGACTTTTGCAGGTCCCAACCTTTAAGACTTGTGATTTCACAATAATGTATTCCGGA GCAGTCTTGAGCCGTTTTACACAATACCAAACACTGGAGTATCTGGATCTGTCTTACAATGAGCTCCGAGGGAAAATTCCAGACGAAATTGGGGATATGA TGGCCCTCCAAGTTCTTGAATTATCTCATAACCAGCTATCTGGAGAGATTCCAGCATCACTTGGCCAGCTCAAGAATTTGGGTGTGTTCGATGCATCACA TAATAGATTGCAGGGTCAAATCCCAGACTCATTCTCAAATCTGTCTTTCCTGGTGCAAATTGATCTGTCAAGTAATGAATTAACAGGGGAAATCCCACAG AGGGGGCAGCTCAGTACACTTCCAGCAACCCAGTACGCAAACAATCCAGGACTTTGTGGGGTTCCATTGACCCCATGTGGGAGCGGAAATAGTCATACAG CATCTAATCCACCCTCAGATGGTGGCAGAGGAGGTAGAAAGACTGCAGCTGCATCTTGGGCTAATAGCATTGTCTTAGGGATCCTTATTTCCATTGCTTC CTTGTGCATTTTGATTGTGTGGGCAATAGCAGTGCGTGTGAGGCATAAGGAAGCAGAGGAAGTCAAGATGCTTAAGAGTTTGCAAGCATCCTATGCTGCC ACAACATGGAAGATTGACAAAGAGAAAGAGCCGTTAAGCATCAATGTAGCCACATTTCAGAGGCATCTGAGGAAGCTAAAGTTTTCCCAGCTCATTGAGG CCACCAACGGCTTCTCTGCAGCAAGCCTTATCGGGTGTGGTGGGTTTGGAGAAGTGTTTAAGGCCACATTGAAGGATGGTTCTAGTGTTGCAATCAAGAA GCTGATAAGATTAAGCTGCCAAGGTGATCGAGAGTTCATGGCCGAAATGGAAACTCTAGGGAAGATAAAGCATAGGAACCTTGTCCCTCTGCTGGGATAT TGCAAAATTGGTGAGGAGAGACTACTTGTGTATGAATTCATGGAGTTTGGAAGTCTCGATGAAATGCTTCACGGAAGAGGAAGAGCACGAGACAGACGGA TTCTAACTTGGGATGAAAGGAAGAAGATTGCGAGGGGTGCAGCCAAGGGACTTTGTTTCCTACATCACAATTGCATCCCACACATTATTCACCGAGACAT GAAGTCAAGCAATGTACTATTGGACAACGAAATGGAAGCTAGAGTTTCAGATTTTGGAATGGCAAGGCTTATAAGTGCACTTGACACTCATCTAAGTGTA AGCACACTCGCAGGAACGCCGGGGTATGTGCCGCCGGAGTACTACCAAAGCTTTCGGTGCACTGCAAAAGGAGATGTCTATTCTTTTGGTGTTGTTCTAC TGGAACTCCTAACAGGTAAACGTCCCACCGATAAAGATGATTTTGGAGACACTAACTTGGTGGGTTGGGTGAAAATGAAGGTAAGAGAAGGGAAACAAAT GGAAGTGATAGACCCAGAATTGCTATCTGTGACTAAAGGAACTGATGAAGCTGAGGCAGAAGAAGTTAAAGAAATGACAAGGTATTTGGAAATATCATTG CAGTGTGTTGATGATTTCCCTTCCAAGAGGGCTAGCATGTTGCAAGTGGTGGCCATGTTGAGAGAGCTGATGCCTGGATCAGCCAGTGGAAGCAGCAATA GTGGTTGA
AA sequence Show only first row Show all	>Potri.010G101100.1 pacid=42796882 polypeptide=Potri.010G101100.1.p locus=Potri.010G101100 ID=Potri.010G101100.1.v4.1 annot-version=v4.1 MESNPVQLFHHLALALLLFMFSVSVSVTEQGLVPSIRTDAAALLSFKKMIQNDPQGVLSGWQINRSPCVWYGVSCTLGRVTHLDLTGCSLAGIISFDPLS SLDMLSALNLSLNLFTVSSTSLLHLPYALQQLQLCYTGLEGPVPENFFSKNPNLVYANLSHNNLSELLPDDLLLNSDKVQTLDLSYNNFTGSFSGLKIEN SCNSLSQLDLSGNHLMDSIPPTLSNCTNLKNLNLSFNMLTGEIPRSFGKLSSLQRLDLSHNHITGWIPSELGNACNSLLELKISYNNISGPVPVSLSPCS LLQTLDLSNNNISGPFPDSILQNLASLERLLLSYNLISGSFPASISYCKSLKIVDLSSNRFSGTIPPDICPGAASLEELRLPDNLIIGEIPAQLSQCSKL KTLDFSINFLNGSIPAELGKLENLEQLIAWYNSLEGKIPPELGKCRNLKDLILNNNNLSGIIPVELFRCTNLEWISLTSNQFTGEIPREFGLLSRLAVLQ LANNSLSGEIPTELGNCSSLVWLDLNSNKLTGEIPPRLGRQLGAKALSGILSGNTLVFVRNVGNSCKGVGGLLEFAGIKAERLLQVPTFKTCDFTIMYSG AVLSRFTQYQTLEYLDLSYNELRGKIPDEIGDMMALQVLELSHNQLSGEIPASLGQLKNLGVFDASHNRLQGQIPDSFSNLSFLVQIDLSSNELTGEIPQ RGQLSTLPATQYANNPGLCGVPLTPCGSGNSHTASNPPSDGGRGGRKTAAASWANSIVLGILISIASLCILIVWAIAVRVRHKEAEEVKMLKSLQASYAA TTWKIDKEKEPLSINVATFQRHLRKLKFSQLIEATNGFSAASLIGCGGFGEVFKATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHRNLVPLLGY CKIGEERLLVYEFMEFGSLDEMLHGRGRARDRRILTWDERKKIARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDNEMEARVSDFGMARLISALDTHLSV STLAGTPGYVPPEYYQSFRCTAKGDVYSFGVVLLELLTGKRPTDKDDFGDTNLVGWVKMKVREGKQMEVIDPELLSVTKGTDEAEAEEVKEMTRYLEISL QCVDDFPSKRASMLQVVAMLRELMPGSASGSSNSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01950		VH1, BRL2	VASCULAR HIGHWAY 1, BRI1-like ...		Potri.010G101100 [exp]	0	1
AT2G01950		VH1, BRL2	VASCULAR HIGHWAY 1, BRI1-like ...		Potri.008G140500 [exp]	1.00	0.9326
AT3G59680			unknown protein		Potri.019G112300 [exp]	6.32	0.8404
AT3G13980			unknown protein		Potri.006G144700 [exp]	7.74	0.8386
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Potri.018G021900 [exp]	8.24	0.8128
AT5G28150			Plant protein of unknown funct...		Potri.002G051600 [exp]	8.48	0.8284
AT1G10380			Putative membrane lipoprotein ...		Potri.008G095900 [exp]	9.16	0.8067
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Potri.001G048200 [exp]	10.58	0.7947
AT3G24660		TMKL1	transmembrane kinase-like 1 (....		Potri.002G251700 [exp]	10.58	0.8337	Pt-TMKL1.1
AT1G79910			Regulator of Vps4 activity in ...		Potri.003G054700 [exp]	11.00	0.8173
AT1G23890			NHL domain-containing protein ...		Potri.017G129500 [exp]	12.00	0.8112

Compare expression of checked genes

Potri.010G101100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.