Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68130 428 / 2e-148 C2H2ZnF IDD14beta, IDD14alpha, ATIDD14 indeterminate(ID)-domain 14 (.1), indeterminate(ID)-domain 14 (.2) AT1G25250 384 / 7e-132 C2H2ZnF ATIDD16 indeterminate(ID)-domain 16 (.1) AT2G01940 338 / 8e-113 C2H2ZnF SGR5, ATIDD15 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) AT3G50700 234 / 2e-72 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1) AT5G66730 234 / 7e-72 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) AT2G02080 233 / 2e-71 C2H2ZnF ATIDD4 indeterminate(ID)-domain 4 (.1), indeterminate(ID)-domain 4 (.2) AT1G03840 233 / 2e-71 C2H2ZnF MGP Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) AT5G03150 229 / 6e-70 C2H2ZnF JKD JACKDAW, C2H2-like zinc finger protein (.1) AT1G14580 228 / 9e-70 C2H2ZnF C2H2-like zinc finger protein (.1.2) AT1G55110 227 / 1e-69 C2H2ZnF ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7, ATIDD7, ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7 indeterminate(ID)-domain 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G140400 [exp] 665 / 0 AT1G68130 437 / 5e-152 indeterminate(ID)-domain 14 (.1), indeterminate(ID)-domain 14 (.2) Potri.015G033100 [exp] 493 / 1e-173 AT2G01940 431 / 1e-148 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) Potri.012G040200 [exp] 476 / 6e-167 AT2G01940 420 / 2e-144 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) Potri.013G019200 [exp] 243 / 2e-75 AT3G50700 327 / 4e-107 indeterminate(ID)-domain 2 (.1) Potri.006G129300 [exp] 242 / 1e-74 AT5G03150 371 / 1e-123 JACKDAW, C2H2-like zinc finger protein (.1) Potri.005G027200 [exp] 241 / 2e-74 AT1G03840 300 / 7e-96 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.002G208444 [exp] 242 / 3e-74 AT3G50700 311 / 2e-100 indeterminate(ID)-domain 2 (.1) Potri.016G088500 [exp] 239 / 1e-73 AT5G03150 353 / 1e-116 JACKDAW, C2H2-like zinc finger protein (.1) Potri.014G180600 [exp] 239 / 2e-73 AT3G50700 368 / 3e-123 indeterminate(ID)-domain 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031314 [exp] 330 / 2e-109 AT1G25250 426 / 2e-146 indeterminate(ID)-domain 16 (.1) Lus10026369 [exp] 321 / 1e-106 AT2G01940 399 / 5e-137 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) Lus10031882 [exp] 316 / 3e-106 AT2G01940 324 / 1e-109 SHOOT GRAVITROPISM 5, ARABIDOPSIS THALIANA INDETERMINATE\(ID\)-DOMAIN 15, C2H2-like zinc finger protein (.1.2.3) Lus10010820 [exp] 241 / 5e-77 AT3G50700 349 / 2e-119 indeterminate(ID)-domain 2 (.1) Lus10007168 [exp] 244 / 2e-75 AT5G66730 386 / 2e-129 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Lus10019927 [exp] 233 / 1e-71 AT5G03150 386 / 6e-130 JACKDAW, C2H2-like zinc finger protein (.1) Lus10041723 [exp] 231 / 2e-70 AT3G50700 489 / 1e-170 indeterminate(ID)-domain 2 (.1) Lus10026497 [exp] 230 / 2e-70 AT5G03150 384 / 2e-129 JACKDAW, C2H2-like zinc finger protein (.1) Lus10004497 [exp] 228 / 6e-70 AT1G55110 341 / 5e-113 indeterminate(ID)-domain 7 (.1) Lus10008396 [exp] 230 / 8e-70 AT3G13810 339 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G101200.1 pacid=42799998 polypeptide=Potri.010G101200.1.p locus=Potri.010G101200 ID=Potri.010G101200.1.v4.1 annot-version=v4.1 ATGTTAGACAGCATCACCACTTCAACTGCTCCTTCTCCTTCCTCTGATCCCTTCACGAGTTCCTTAGATAATGGGCTCACCAATAAAAGAAAAAGAAAAC CTGCAGGCACACCAGATCCAGATGCAGAGGTTGTATCTCTATCGCCCAGGACCTTACTAGAATCAGACAGATATGTCTGTGAGATCTGTAGCCAAGGGTT TCAAAGAGACCAGAACCTACAAATGCATAGGAGAAGGCACAAGGTACCATGGAAATTACTGAAAAGGGAGACACAAGAAGTGAAGAAGAGAGTTTATGTA TGCCCTGAACCAAGCTGCTTACACCATGACCCATGCCATGCTTTAGGAGATCTTGTTGGCATAAAGAAGCACTTTAGAAGGAAGCACAGTAATCACAAGC AGTGGGTTTGTGAGAAGTGCTCTAAAGGTTATGCTGTTCAGTCTGATTACAAAGCTCACCTCAAAACTTGTGGTACAAGAGGTCATTCTTGTGACTGTGG CCGTGTATTTTCCAGGGTGGAGAGTTTCATCGAGCACCAAGATGCTTGCACAGTAAGGCGAGCCCAGCCTGAACTACAGGCATTGCAGCCGGCGGCCTGC TCATCCAGAACCGCCTCAAGCACCAGCCCTTCAAGTGATGCCAATTTTAGCATAGTTCCGTTACCAGGGATACCAATGTCAAAGGCAACCGAACCAGTTT ACTTTTACTCGGATAGAAATGATGCATCTACTAGTCAGCAAGAACACAATCTTGAACTTCAGCTCCTACCATCTTCAAGCACTCACTTCCCACAAAATCC TGACGAGGGTTACGCTACAAATTTGAAGCTTTCAATAGGGTCAAGTGATAGTTTAAAAAAAAACGAACAATTCAAGGCCATTATGGATCCAAGTGGCCCG AAAAGAACTTATGAACCTACACTAGAAGCAGCAAAGTTAGAGGAGTTTGCTAATGAACAGTTGAGGTTGGCTATAACTGAAAAGGCCTATGCTGAGGAGG CTAGACAACATGCAAAGAGACAAATTGAGATGGCTGAACTGGAATTTGCAAATGCGAAGAGGATAAGGCAACAAGCTCAAGCTGAGCTTGAAAAGGCTCA AGTTTTGAGAGAGCAAGCTACAAAGAAGATTAGCTCTACCATTATGCAAGTCACCTGCCAAGCTTGCAAGCTACAATTCAAACTATCAACGGCTGCTGCA TCGGCAGACGAAACCTCCCTTGCTATGAGTTACATGTCCTCAGCAACTACTGAAGGGGACGGGGAGTGA
AA sequence Show only first row Show all	>Potri.010G101200.1 pacid=42799998 polypeptide=Potri.010G101200.1.p locus=Potri.010G101200 ID=Potri.010G101200.1.v4.1 annot-version=v4.1 MLDSITTSTAPSPSSDPFTSSLDNGLTNKRKRKPAGTPDPDAEVVSLSPRTLLESDRYVCEICSQGFQRDQNLQMHRRRHKVPWKLLKRETQEVKKRVYV CPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACTVRRAQPELQALQPAAC SSRTASSTSPSSDANFSIVPLPGIPMSKATEPVYFYSDRNDASTSQQEHNLELQLLPSSSTHFPQNPDEGYATNLKLSIGSSDSLKKNEQFKAIMDPSGP KRTYEPTLEAAKLEEFANEQLRLAITEKAYAEEARQHAKRQIEMAELEFANAKRIRQQAQAELEKAQVLREQATKKISSTIMQVTCQACKLQFKLSTAAA SADETSLAMSYMSSATTEGDGE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68130	C2H2ZnF	IDD14beta, IDD1...	indeterminate(ID)-domain 14 (....		Potri.010G101200 [exp]	0	1
AT4G02110			transcription coactivators (.1...		Potri.014G122400 [exp]	6.16	0.6984
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Potri.010G070700 [exp]	8.36	0.7218
AT4G35900	bZIP	ATBZIP14, FD-1,...	Basic-leucine zipper (bZIP) tr...		Potri.005G243400 [exp]	8.48	0.7228
AT5G65170			VQ motif-containing protein (....		Potri.005G076600 [exp]	9.38	0.7382
AT1G68130	C2H2ZnF	IDD14beta, IDD1...	indeterminate(ID)-domain 14 (....		Potri.008G140400 [exp]	10.58	0.7474
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Potri.013G072800 [exp]	14.07	0.7267
AT3G23290		LSH4	LIGHT SENSITIVE HYPOCOTYLS 4, ...		Potri.008G167700 [exp]	17.32	0.6252
AT3G50700	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1...		Potri.002G263600 [exp]	28.77	0.7167
AT2G28200	C2H2ZnF		C2H2-type zinc finger family p...		Potri.011G168900 [exp]	29.66	0.7240
AT2G16230			O-Glycosyl hydrolases family 1...		Potri.014G182000 [exp]	29.69	0.7101

Compare expression of checked genes

Potri.010G101200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.