Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22260 649 / 0 MS1 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G66170 347 / 4e-110 MMD1 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G01810 310 / 5e-96 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G33420 305 / 3e-94 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G07714 113 / 2e-28 transcription factor-related (.1) ATMG00550 80 / 3e-17 ATMG00550.1, ORF160 unknown protein AT1G32810 54 / 3e-07 RING/FYVE/PHD zinc finger superfamily protein (.2) AT5G23610 50 / 4e-06 unknown protein AT4G10600 44 / 0.0001 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G51330 43 / 0.0008 DYAD, SWI1 SWITCH1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G135200 [exp] 385 / 1e-124 AT1G66170 728 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.008G137200 [exp] 331 / 2e-104 AT2G01810 561 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.004G134700 [exp] 299 / 5e-92 AT1G33420 634 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.T045600 [exp] 292 / 2e-89 AT1G33420 625 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.018G137000 [exp] 291 / 5e-89 AT1G33420 637 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.013G092000 [exp] 286 / 4e-87 AT1G33420 798 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.011G152600 [exp] 55 / 2e-07 AT1G32810 238 / 3e-64 RING/FYVE/PHD zinc finger superfamily protein (.2) Potri.004G137000 [exp] 52 / 8e-07 AT5G23610 276 / 1e-86 unknown protein Potri.001G448900 [exp] 50 / 7e-06 AT4G10600 195 / 3e-56 RING/FYVE/PHD zinc finger superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030773 [exp] 764 / 0 AT5G22260 626 / 0.0 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10013251 [exp] 755 / 0 AT5G22260 625 / 0.0 male sterility 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10010966 [exp] 353 / 1e-112 AT1G66170 630 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10039160 [exp] 264 / 3e-78 AT1G33420 746 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10013775 [exp] 249 / 4e-73 AT1G33420 650 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10031357 [exp] 206 / 3e-57 AT1G66170 620 / 0.0 MALE MEIOCYTE DEATH 1, RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10017342 [exp] 51 / 3e-06 AT1G32810 320 / 2e-92 RING/FYVE/PHD zinc finger superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger
Representative CDS sequence Show only first row Show all	>Potri.010G101300.1 pacid=42796815 polypeptide=Potri.010G101300.1.p locus=Potri.010G101300 ID=Potri.010G101300.1.v4.1 annot-version=v4.1 ATGATGTCTTATTTGGACCTAATTAGCAGCAAGAAAAGGAAGAGAGAAGAGAGGGTGTTCAGGTTCAAGATTTTTGGTGAAAATGGCTACCCAGTTGAGT TTGACGGGTCATTCCAACAAAATATCAAAAAGCTTCTTGAACTTGGGCATTTTCAGAGAAATATTTGCAGTAGAATGCCAAGCTGGTCATTTAAGCTTGA AGTCATACGCCAACCTTCTTTTCACATCTTGTTGTTTGTTGTCGAGGAACCAATTGAGGCATCGCTAGAACATCATTGCAAGCACTGCCAGTATCTTGGC TGGGGTCAGAATATGATTTGCAACAGGAAGTATCACTTTGTTCTACCTTCGAAGGACATAGAAGCAGCTTTTTTGAACTGTCAAGATGGGGCAATTTCAA CAAAAGACAACTTCAATTTAGTGCAATCACGGGGCCATCTCATGCATGGTATCTTCCACTCTAATGGGTTCGGGCATTTGCTGTGTGTCAATGGGATGGA AGGAGGTTCCGACTTGGCTGGATGCCAGATCATGGAATTTTGGGATCGGTTGTGCACGGGATTGCGAGCAAGGAAAGTGAGCTTGAATGACATTTCACAG AAAAGAAGTATGGAATTGAGACTACTCCACGGTGTAGCATTCAGTGAACCATGGTTCGGTCGTTGGGGTTATAAATTCGGGCGTGGAAGCTTCGGGGTCA CTCAACCAATGCACCAGAAAGCCATTGAAACTATACAAGGCATGCCCTTATGCATACTTGTTCATTATCTTGGGAATTCTAATCATCATATTCCAGTCAT TCTCTCTAGGTACCAAACGGTATCAGATCATTCTTTGGTGACACTTGGTGACCTATTCCGCTTCATGTTAGAACTCAAGACCCACCTTCCAGAAGAAAAT TGTGTCGATAGCCATATTGTGAAACCTACTTGTAGATGGTCTCCAAAACGAGTTGAAATGGCAACAAGGGTGATTGTGGAAGCTCTAAAAAGGGCTGAAT TTAGGTGGGTTTCAAGACAAGATGTTAGGGACGCTGCTCGTGCCTATATTGGCGACACAGGTTTGCTAGATTTTGTGCTAAAATCACTCGGAAACCATGT AGTAGGGAATTATTTAGTTCGGCGCTGCTTGAATCCAGTAACAAAGGTTTTAGAGTATTGCTTGGAAGATGTCTCAAATGTACATCCTGAACAACAAGGT TTGGTCATCAACAATTCAAAAATGAAAGGTAGATACAGGATGACAAGGCCTCAACTAATGAAGGACATGCTCTACTTGTACAGATGTATCCTCAAAGACC AAAAACCAACAATGAACCAAGGGATTCTTAGCGCAATACCAGCAGCTACAAGGATAATTCTTGACACCAAATACCTTGTCAAAGAATATAATGGCGAACT GCCATGGAAAATTCATCACACCGGCCATGAGGAAGCTGGGAAAATGACACTGTATTGCACGGTTTTTTTAAGAGACAAACAAGAGAGCAATGAAGTGATG AAAAAGGCAATGCCACCATTGGAATGCATCACCTTGAAAAACAACGCTACCTTCAATGAGCTTAAACTAGAAGTGGAAAGGAAGTTCAGAGAATTGTACT GGGGATTGAAAAGCTTCGTTGTAGAGTCAATAATGAACTTGAATGTGAAGGGCACGGATTTGGTTTCCGAAGTAGTTGAAGTGGGTCAAAAAATTGTGTT AGAGGGGAGCAACGCAGAGAGCGGAACAATCAACGAGTTAATATATGAATGTGGCGTTAATAACCGAGTCGTAGATTGTGCCTGTGGAGCCAAAGAAGAT GATGGTGAGAGAATGATATCATGTGATATCTGTGAAGTTTGGCAGCATAGTAGATGTGTTCAAATTCCAAATAATCAGGAAATGCCTCCTATATTTCTCT GCAGCCGCTGTGAGAAGGAAATCATGATTTTACCATCTATGCCATAG
AA sequence Show only first row Show all	>Potri.010G101300.1 pacid=42796815 polypeptide=Potri.010G101300.1.p locus=Potri.010G101300 ID=Potri.010G101300.1.v4.1 annot-version=v4.1 MMSYLDLISSKKRKREERVFRFKIFGENGYPVEFDGSFQQNIKKLLELGHFQRNICSRMPSWSFKLEVIRQPSFHILLFVVEEPIEASLEHHCKHCQYLG WGQNMICNRKYHFVLPSKDIEAAFLNCQDGAISTKDNFNLVQSRGHLMHGIFHSNGFGHLLCVNGMEGGSDLAGCQIMEFWDRLCTGLRARKVSLNDISQ KRSMELRLLHGVAFSEPWFGRWGYKFGRGSFGVTQPMHQKAIETIQGMPLCILVHYLGNSNHHIPVILSRYQTVSDHSLVTLGDLFRFMLELKTHLPEEN CVDSHIVKPTCRWSPKRVEMATRVIVEALKRAEFRWVSRQDVRDAARAYIGDTGLLDFVLKSLGNHVVGNYLVRRCLNPVTKVLEYCLEDVSNVHPEQQG LVINNSKMKGRYRMTRPQLMKDMLYLYRCILKDQKPTMNQGILSAIPAATRIILDTKYLVKEYNGELPWKIHHTGHEEAGKMTLYCTVFLRDKQESNEVM KKAMPPLECITLKNNATFNELKLEVERKFRELYWGLKSFVVESIMNLNVKGTDLVSEVVEVGQKIVLEGSNAESGTINELIYECGVNNRVVDCACGAKED DGERMISCDICEVWQHSRCVQIPNNQEMPPIFLCSRCEKEIMILPSMP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22260		MS1	male sterility 1, RING/FYVE/PH...		Potri.010G101300 [exp]	0	1
					Potri.004G183032 [exp]	18.00	0.6800
					Potri.001G031200 [exp]	31.36	0.7624
AT1G78720			SecY protein transport family ...		Potri.011G114200 [exp]	49.90	0.6382
AT5G58200			Calcineurin-like metallo-phosp...		Potri.018G111500 [exp]	50.37	0.6382
					Potri.001G174350 [exp]	57.16	0.6187
					Potri.012G136500 [exp]	71.87	0.6000
AT5G28470			Major facilitator superfamily ...		Potri.016G103200 [exp]	237.69	0.5706

Compare expression of checked genes

Potri.010G101300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.