Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14685 300 / 1e-102 BBR_BPC BBR/BPC2, ATBPC2, BPC2 basic pentacysteine 2 (.1.2.3) AT2G01930 297 / 4e-101 BBR_BPC BPC1, BBR/BPC1, ATBPC1 basic pentacysteine1 (.1.2) AT1G68120 266 / 4e-89 BBR_BPC BPC3, BBR/BPC3, ATBPC3 basic pentacysteine 3 (.1) AT2G35550 167 / 4e-51 BBR_BPC BPC7, BBR/BPC7, ATBPC7 basic pentacysteine 7 (.1.2.3.4) AT5G42520 146 / 3e-42 BBR_BPC BPC6, BBR/BPC6, ATBPC6 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3) AT2G21240 143 / 5e-41 BBR_BPC BPC4, BBR/BPC4, ATBPC4 basic pentacysteine 4 (.1.2) AT4G38910 137 / 3e-39 BBR_BPC BPC5, BBR/BPC5, ATBPC5 basic pentacysteine 5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G140200 [exp] 493 / 8e-179 AT2G01930 296 / 1e-100 basic pentacysteine1 (.1.2) Potri.012G040600 [exp] 300 / 4e-102 AT2G01930 259 / 3e-86 basic pentacysteine1 (.1.2) Potri.015G032900 [exp] 296 / 1e-100 AT1G14685 259 / 3e-86 basic pentacysteine 2 (.1.2.3) Potri.015G032800 [exp] 292 / 2e-99 AT1G14685 268 / 9e-90 basic pentacysteine 2 (.1.2.3) Potri.012G040700 [exp] 280 / 2e-94 AT1G14685 247 / 1e-81 basic pentacysteine 2 (.1.2.3) Potri.012G040800 [exp] 211 / 4e-67 AT1G14685 190 / 3e-59 basic pentacysteine 2 (.1.2.3) Potri.001G133900 [exp] 168 / 2e-51 AT2G35550 199 / 3e-64 basic pentacysteine 7 (.1.2.3.4) Potri.015G033000 [exp] 156 / 3e-47 AT2G01930 123 / 1e-34 basic pentacysteine1 (.1.2) Potri.005G235900 [exp] 157 / 8e-46 AT5G42520 428 / 6e-151 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040427 [exp] 358 / 6e-125 AT2G01930 295 / 4e-100 basic pentacysteine1 (.1.2) Lus10023543 [exp] 353 / 5e-123 AT2G01930 292 / 5e-99 basic pentacysteine1 (.1.2) Lus10012389 [exp] 154 / 9e-45 AT5G42520 432 / 1e-152 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3) Lus10024313 [exp] 153 / 2e-44 AT5G42520 436 / 5e-154 ARABIDOPSIS THALIANA BASIC PENTACYSTEINE 6, basic pentacysteine 6 (.1.2.3) Lus10031078 [exp] 147 / 2e-42 AT2G21240 323 / 5e-111 basic pentacysteine 4 (.1.2) Lus10042056 [exp] 144 / 2e-41 AT2G21240 350 / 1e-121 basic pentacysteine 4 (.1.2) Lus10035462 [exp] 147 / 4e-41 AT2G21240 325 / 2e-109 basic pentacysteine 4 (.1.2) Lus10018060 [exp] 143 / 6e-41 AT2G21240 355 / 1e-123 basic pentacysteine 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06217 [poplar] [flax] GAGA_bind GAGA binding protein-like family
Representative CDS sequence Show only first row Show all	>Potri.010G101400.1 pacid=42798185 polypeptide=Potri.010G101400.1.p locus=Potri.010G101400 ID=Potri.010G101400.1.v4.1 annot-version=v4.1 ATGGACGACGATGCATTGAACATGCGCAATTGGGGTTATTATGAACCGTCATACAAGGAGCCACTAGGTCTCCAGCTAATGCCAGCCATGGTAGACCGTG ATTCGAAGCATCTCCTACCCAGGCGTGATCCGAATAACATCATGGTTGGTGCCACTGGAGCCTACCTTCCGCGTGAGTCTTTGGTTTCGGATGCCTCTAT GCATATGAATTATATGAGGGATAGTTGGATAAACCGGGAGAAGTTTTTAAATATGCTACCCCCAAATCCTAGTTATGTTGTTCACCCTGAAACTTCTGGA GCTCAGTCCATGCCAATGTTACAGCCACCCGATTCATCAAGGGATGAGAGGGTGAGTAGGATGGAGGAGCCTAGTGTAAGTAAGGAAGGTAGCCAGTTGA AGAAAAGACAAGTTGGGGGTACCGCCCCCAAAACTCCCAAACCTAAGAAACCTAGAAAGCCAAAAGATGGTAACAACAATACAGTTCAGCGTGCGAAGCC AGCTAAGAAAAGTGTGGATGTTGTTATAAATGGGATTGATATGGACATTTCAGGTATCCCAATTCCGGTCTGCTCATGTACCGGAATTCCTCAGCAATGT TATCGATGGGGCTGTGGAGGATGGCAGTCTGCATGTTGCACCACAAATGTCTCGATGTATCCTCTGCCAATGAGTACCAAAAGACGCGGTGCAAGGATAG CTGGAAGGAAAATGAGTCAGGGTGCATTTAAGAAGGTACTGGAGAAGCTCGCGGCTGAAGGTTATAACTTTGCTAACCCAATTGATTTAAGGACTCACTG GGCAAGACATGGAACCAACAAGTTTGTCACTATCAGGTAG
AA sequence Show only first row Show all	>Potri.010G101400.1 pacid=42798185 polypeptide=Potri.010G101400.1.p locus=Potri.010G101400 ID=Potri.010G101400.1.v4.1 annot-version=v4.1 MDDDALNMRNWGYYEPSYKEPLGLQLMPAMVDRDSKHLLPRRDPNNIMVGATGAYLPRESLVSDASMHMNYMRDSWINREKFLNMLPPNPSYVVHPETSG AQSMPMLQPPDSSRDERVSRMEEPSVSKEGSQLKKRQVGGTAPKTPKPKKPRKPKDGNNNTVQRAKPAKKSVDVVINGIDMDISGIPIPVCSCTGIPQQC YRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14685	BBR_BPC	BBR/BPC2, ATBPC...	basic pentacysteine 2 (.1.2.3)		Potri.010G101400 [exp]	0	1
AT5G09920		NRPB4, ATRPB15....	RNA polymerase II, Rpb4, core ...		Potri.007G080400 [exp]	5.09	0.7873
AT2G45850	AT-hook		AT hook motif DNA-binding fami...		Potri.014G082100 [exp]	5.09	0.7519
AT5G49650		XK2, XK-2	XYLULOSE KINASE 2, xylulose ki...		Potri.019G077600 [exp]	7.34	0.7438
AT4G27450			Aluminium induced protein with...		Potri.004G040600 [exp]	8.24	0.7448
AT5G19680			Leucine-rich repeat (LRR) fami...		Potri.018G086200 [exp]	9.00	0.7837
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Potri.005G053800 [exp]	10.19	0.7658	Pt-IAA8.1
AT1G01225			NC domain-containing protein-r...		Potri.002G174700 [exp]	10.39	0.7774
					Potri.003G070000 [exp]	11.00	0.7885
AT4G23496		SP1L5	SPIRAL1-like5 (.1)		Potri.003G131600 [exp]	14.69	0.7532
AT1G23390			Kelch repeat-containing F-box ...		Potri.010G042900 [exp]	33.27	0.7242

Compare expression of checked genes

Potri.010G101400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.