Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01900 538 / 0 DNAse I-like superfamily protein (.1) AT2G37440 343 / 5e-114 DNAse I-like superfamily protein (.1.2) AT5G65090 276 / 5e-88 DER4, MRH3, BST1 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) AT2G32010 276 / 3e-86 CVL1 CVP2 like 1 (.1.2) AT1G05470 276 / 3e-86 CVP2 COTYLEDON VASCULAR PATTERN 2, DNAse I-like superfamily protein (.1) AT5G04980 268 / 3e-85 DNAse I-like superfamily protein (.1.2) AT3G63240 269 / 2e-84 DNAse I-like superfamily protein (.1) AT1G34120 246 / 6e-75 AT5PTASE1, ATIP5PI, AT5P1, IP5PI MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1, inositol polyphosphate 5-phosphatase I (.1.2.3) AT4G18010 245 / 2e-74 AT5PTASE2, IP5PII INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) AT1G71710 238 / 2e-71 DNAse I-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G139600 [exp] 747 / 0 AT2G01900 521 / 0.0 DNAse I-like superfamily protein (.1) Potri.015G032200 [exp] 481 / 7e-168 AT2G01900 476 / 1e-166 DNAse I-like superfamily protein (.1) Potri.012G041600 [exp] 478 / 6e-167 AT2G01900 472 / 3e-165 DNAse I-like superfamily protein (.1) Potri.017G074200 [exp] 294 / 1e-94 AT2G37440 328 / 8e-108 DNAse I-like superfamily protein (.1.2) Potri.008G155700 [exp] 280 / 2e-88 AT2G32010 914 / 0.0 CVP2 like 1 (.1.2) Potri.008G011000 [exp] 273 / 1e-86 AT5G04980 534 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.010G084300 [exp] 275 / 3e-86 AT2G32010 865 / 0.0 CVP2 like 1 (.1.2) Potri.010G247800 [exp] 272 / 5e-86 AT5G04980 552 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.002G050000 [exp] 273 / 8e-86 AT3G63240 785 / 0.0 DNAse I-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031310 [exp] 336 / 1e-112 AT2G01900 320 / 3e-107 DNAse I-like superfamily protein (.1) Lus10024427 [exp] 299 / 5e-91 AT2G37440 489 / 2e-162 DNAse I-like superfamily protein (.1.2) Lus10006597 [exp] 277 / 3e-89 AT2G32010 581 / 0.0 CVP2 like 1 (.1.2) Lus10039352 [exp] 278 / 7e-87 AT2G32010 894 / 0.0 CVP2 like 1 (.1.2) Lus10008934 [exp] 258 / 7e-84 AT5G04980 395 / 3e-138 DNAse I-like superfamily protein (.1.2) Lus10006904 [exp] 266 / 8e-83 AT3G63240 711 / 0.0 DNAse I-like superfamily protein (.1) Lus10028884 [exp] 261 / 7e-82 AT5G04980 526 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10034857 [exp] 257 / 2e-80 AT5G04980 530 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10033398 [exp] 257 / 6e-80 AT5G04980 540 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10028697 [exp] 251 / 5e-76 AT1G71710 675 / 0.0 DNAse I-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G101700.2 pacid=42798301 polypeptide=Potri.010G101700.2.p locus=Potri.010G101700 ID=Potri.010G101700.2.v4.1 annot-version=v4.1 ATGAGCTTCATCATGGCAGAAAACCAAGAAGAATTAGTCATGTGGCCAAGATTAGTAACTAAGAAGATTCTTGGAGAAAGATTGAGGAGCAACAACAACT TTGTGGCAGATTTTCCAAGCAACGCAGAAGCCAGCAGCTTGCTGGATAATTCAAGCTTAGGTTCGCCATCTTTGAGCGAGAACAACATCCTCAATCAGCG CAAGCACAACTTCCAAAACTACAAGATCTTCATCAGCACATGGAATGTTGGCGGGATTGCACCACAGGACGATTTGGACATTGCCGATTGGCTAGATACT CCCAATAATATGTGTGACATATACGTTTTTGGGTTTCAAGAGATTGTACCTCTAAGAGCATCATATGTTTTAGGTTCCGAAAATAGTAAGATTTCAGTGA AATGGAATTCATTGATTAGAGAAGCATTGAACAAGAAGATTCAGCATTGCCTAGAAAAACAGCAATACAATAATAAATTAGGAAGAAAACAAAAAACTGC TGAAGATGATAAGGCAATATTCGAAAGCAGCATTCCTGAAGGCTTCCGGTGTGTCATTAGTAAGCAAATGGTCGGAATATTAATATCAGTTTGGATTCGA AGTGATCTGCGTCCTTATGTCCGGCATCCTAGGGCCTCTTGTGTAGGCTGTGGCATCATGGGTTACCTAGGAAACAAGGGATCTGTGTCAGTTAGATTTC AGTTACATGAAACAAGCTTCTGCTTTGTGTGTAGTCATCTAGCTTCAGGAGGTAGAGAGGGGGATGAAAAGCATAGAAAATCCGACGTAGCTGAAATATT TTCTCGAACAAGCTTCCCTAGAGGGCCTTCGTTTGATTTGCCGCGAAAGATTCTAGATCATGACCGAGTAATTTTGCTTGGAGATTTGAATTATAGAATT TCTCTACCAGAAGCAACAACTCGATTATTGGTGGATAGAAAAGAATGGAATGCCTTGCTAGAAAACGATCAGCTAAGGATGGAGCTCATGAGTGGTCAAG TATTTGAAGGTTGGCGTGAAGGACTTATCAAATTTGCTCCCACTTACAAATATTGCCTGAATTCAAATGTATATTTTGGATGTGTTGAAGGCCAAAAAGG TGGAAAGTGGCGCGCCCCAGCATGGTGTGATCGGATTATTTGGTACGGAGAGGGACTACAGCAACGTCTGTATACTAGAGGTGAATCAAACTTGTCTGAT CATAGACCAGTCAAGGCAATATTTACTGCACAAGTTCAGGTATCAAGCACATTAAAAGGACTTCAAAAATTCTTCCTGTCAGAGAGGTTTGATCAAATAA CAACCAAATTTGATCAGATGTCATCATCCGATAAATTTCGATGCAGGGACAGATCTTCAAATTGTAAAAAGATACATTGA
AA sequence Show only first row Show all	>Potri.010G101700.2 pacid=42798301 polypeptide=Potri.010G101700.2.p locus=Potri.010G101700 ID=Potri.010G101700.2.v4.1 annot-version=v4.1 MSFIMAENQEELVMWPRLVTKKILGERLRSNNNFVADFPSNAEASSLLDNSSLGSPSLSENNILNQRKHNFQNYKIFISTWNVGGIAPQDDLDIADWLDT PNNMCDIYVFGFQEIVPLRASYVLGSENSKISVKWNSLIREALNKKIQHCLEKQQYNNKLGRKQKTAEDDKAIFESSIPEGFRCVISKQMVGILISVWIR SDLRPYVRHPRASCVGCGIMGYLGNKGSVSVRFQLHETSFCFVCSHLASGGREGDEKHRKSDVAEIFSRTSFPRGPSFDLPRKILDHDRVILLGDLNYRI SLPEATTRLLVDRKEWNALLENDQLRMELMSGQVFEGWREGLIKFAPTYKYCLNSNVYFGCVEGQKGGKWRAPAWCDRIIWYGEGLQQRLYTRGESNLSD HRPVKAIFTAQVQVSSTLKGLQKFFLSERFDQITTKFDQMSSSDKFRCRDRSSNCKKIH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01900			DNAse I-like superfamily prote...		Potri.010G101700 [exp]	0	1
AT2G28160	bHLH	ATFIT1, ATBHLH2...	ARABIDOPSIS FE-DEFICIENCY INDU...		Potri.009G005600 [exp]	1.00	0.9903
AT2G47000		PGP4 ,MDR4, ABC...	MULTIDRUG RESISTANCE 4, ARABID...		Potri.010G003000 [exp]	3.87	0.9868
AT1G64780		ATAMT1;2	ammonium transporter 1;2 (.1)		Potri.019G023600 [exp]	4.00	0.9869
AT5G15180			Peroxidase superfamily protein...		Potri.007G122250 [exp]	4.00	0.9877
AT5G15180			Peroxidase superfamily protein...		Potri.007G122301 [exp]	4.89	0.9873
AT1G14540			Peroxidase superfamily protein...		Potri.001G458700 [exp]	4.89	0.9734
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.005G250500 [exp]	6.16	0.9662
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.002G039600 [exp]	6.48	0.9852
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Potri.004G156300 [exp]	7.34	0.9857
AT1G52570		PLDALPHA2	phospholipase D alpha 2 (.1)		Potri.018G131200 [exp]	8.00	0.9812

Compare expression of checked genes

Potri.010G101700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.