Plant FIBer expression Database

Potri.010G101900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G17790 443 / 6e-157 ATACP5, ATPAP17, PAP17 purple acid phosphatase 17 (.1)
AT1G14700 429 / 5e-151 PAP3, ATPAP3 purple acid phosphatase 3 (.1.2)
AT1G25230 418 / 3e-147 Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
AT2G01890 415 / 6e-146 PAP8, ATPAP8 purple acid phosphatase 8 (.1.2)
AT2G01880 372 / 4e-129 PAP7, ATPAP7 purple acid phosphatase 7 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G031400
[exp]
466 / 2e-166 AT3G17790 473 / 1e-168 purple acid phosphatase 17 (.1)
Potri.012G042200
[exp]
455 / 5e-162 AT3G17790 437 / 7e-155 purple acid phosphatase 17 (.1)
Potri.008G139100
[exp]
453 / 9e-161 AT1G14700 476 / 2e-169 purple acid phosphatase 3 (.1.2)
Potri.015G031300
[exp]
433 / 3e-153 AT1G14700 444 / 5e-157 purple acid phosphatase 3 (.1.2)
Potri.001G023400
[exp]
50 / 1e-06 AT5G50400 345 / 1e-110 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031941
[exp]
463 / 3e-165 AT1G14700 426 / 2e-150 purple acid phosphatase 3 (.1.2)
Lus10035100
[exp]
439 / 2e-153 AT1G14700 419 / 7e-145 purple acid phosphatase 3 (.1.2)
Lus10019133
[exp]
372 / 4e-129 AT2G01890 417 / 5e-147 purple acid phosphatase 8 (.1.2)
Lus10034429
[exp]
360 / 8e-125 AT1G14700 416 / 2e-146 purple acid phosphatase 3 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0163 Calcineurin PF00149 Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence
>Potri.010G101900.1 pacid=42799846 polypeptide=Potri.010G101900.1.p locus=Potri.010G101900 ID=Potri.010G101900.1.v4.1 annot-version=v4.1
ATGACTAGCCATGGCTTTTATTCAAAATCACAGGCTTCATGCATTGGTGTGGCACTATTATTTTGCACGTCTTTAGTTATTCCTAGTTTTGCAGAGCTTG
AAAGGCTTGAACACCCCGCTAAAGGTGATGGATCACTTAGCTTTTTGGTGGTTGGAGACTGGGGGAGAAGAGGCTTCTACAACCAGTCTCATGTTGCTTT
TCAGATGGGAAAGATTGGGGAGAAACTAGACATAGATTTTGTCGTCTCAACGGGAGATAATTTCTATGATAATGGATTAACGGGTCTAAATGATCAAGCA
TTCGAAGAGTCATTCACCAAGATCTACACAGCTACGAGCCTGCAAAAACAATGGTATAGTGTATTGGGAAATCATGACTACAGAGGTGATGTAGAGGCAC
AAGTACACCCTGCGCTTAGGAAGGTTGATAGTAGATGGCTTTGCCTTAGATCTTTCATCCTTAATGCAGAAATAGCGGGGTTCTTCTTCGTCGACACCAC
TCCATTTGTCAACGACTATTTCACTGACATAGATCATACTTATGATTGGCGAGGTGTGACTCCTCGAAAAGCATACCTTGATAGCCTTATTAAGGATTTG
GAATCTGCATTGAGCGAATCAACTGCGAGGTGGAAAATTGTTGTCGGTCACCATGCAATCAAAAGTGCTGGGTATCATGGAGACACAAAGGAACTCAATG
ATCTACTTCTACCAATGCTCAAGGCATACAATGTCGATATGTACGTGAATGGGCATGACCACTGCCTCGAACACATCAGCAGCCTTGATAGTCCAATCCA
ATATCTAACAAGTGGAGCTGGTTCAAAGGCATGGAGGGGAGACCTCAACCAACACTATAAGGAGGATGATTTGAGATTCTTCTACGACGGTCAGGGTTTC
ATGTCAGTGCAATTGACCAAGAACGATGCTGAGATTACGTTCTATAACGCTTTTGGCAAGATTTTACACGAATGGAAGGCATTGAAGGAGCTTCACTCAG
CAGTATAA
AA sequence
>Potri.010G101900.1 pacid=42799846 polypeptide=Potri.010G101900.1.p locus=Potri.010G101900 ID=Potri.010G101900.1.v4.1 annot-version=v4.1
MTSHGFYSKSQASCIGVALLFCTSLVIPSFAELERLEHPAKGDGSLSFLVVGDWGRRGFYNQSHVAFQMGKIGEKLDIDFVVSTGDNFYDNGLTGLNDQA
FEESFTKIYTATSLQKQWYSVLGNHDYRGDVEAQVHPALRKVDSRWLCLRSFILNAEIAGFFFVDTTPFVNDYFTDIDHTYDWRGVTPRKAYLDSLIKDL
ESALSESTARWKIVVGHHAIKSAGYHGDTKELNDLLLPMLKAYNVDMYVNGHDHCLEHISSLDSPIQYLTSGAGSKAWRGDLNQHYKEDDLRFFYDGQGF
MSVQLTKNDAEITFYNAFGKILHEWKALKELHSAV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G17790 ATACP5, ATPAP17... purple acid phosphatase 17 (.1... Potri.010G101900
[exp]
0 1
AT5G19600 SULTR3;5 sulfate transporter 3;5 (.1) Potri.006G156038
[exp]
5.47 0.9681
AT5G19600 SULTR3;5 sulfate transporter 3;5 (.1) Potri.006G158900
[exp]
5.74 0.9676
AT1G78940 Protein kinase protein with ad... Potri.014G001700
[exp]
7.21 0.9655
AT1G57790 F-box family protein (.1) Potri.012G106750
[exp]
8.36 0.9616
AT3G02230 ATRGP1, RGP1 ARABIDOPSIS THALIANA REVERSIBL... Potri.012G101100
[exp]
13.26 0.9436
AT3G54340 MADS AP3, ATAP3 APETALA 3, K-box region and MA... Potri.002G028400
[exp]
16.24 0.9617 Pt-APETALA3.1
Potri.002G227701
[exp]
17.66 0.9624
AT1G26360 ATMES13, SP1L1 ARABIDOPSIS THALIANA METHYL ES... Potri.008G096900
[exp]
18.73 0.9282
AT1G05680 UGT74E2 Uridine diphosphate glycosyltr... Potri.007G141700
[exp]
22.47 0.9316 Pt-ZOG1.2
AT3G21090 ABCG15 ATP-binding cassette G15, ABC-... Potri.016G056600
[exp]
29.24 0.9617

Potri.010G101900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.