Plant FIBer expression Database

Potri.010G102000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G03280 484 / 7e-169 Transcription factor TFIIE, alpha subunit (.1)
AT4G20340 417 / 2e-142 Transcription factor TFIIE, alpha subunit (.1)
AT4G20810 365 / 3e-123 transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G051000
[exp]
659 / 0 AT1G03280 498 / 1e-174 Transcription factor TFIIE, alpha subunit (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019269
[exp]
529 / 0 AT1G03280 505 / 3e-177 Transcription factor TFIIE, alpha subunit (.1)
Lus10011554
[exp]
498 / 4e-174 AT1G03280 505 / 2e-177 Transcription factor TFIIE, alpha subunit (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF02002 TFIIE_alpha TFIIE alpha subunit
Representative CDS sequence
>Potri.010G102000.1 pacid=42797404 polypeptide=Potri.010G102000.1.p locus=Potri.010G102000 ID=Potri.010G102000.1.v4.1 annot-version=v4.1
ATGGACATGAACACGACGATAAGCGTTGAGCCTTTCAAGCGGCTTGTAAAGCTTGCGGCTCGAGCATTTTATGATGATGTATCAACAAAAGGAGAAAATC
AGTCCAAAAACAACGCTCGCGGCGACAACAAAGGCATTGCCGTCGTCGTTCTTGATGCTCTCACCAGGCGACTATGGGTTAACGAAGAAGGTTTGGCTAA
AGACTTGAAAATACACATTAAGCAACTTCGTCGGATTCTCCGCCTTTTTGAGGAAGATAAACTCCTCACCCGTGCTCATAGGAAAGAGACAGCAAAGGTT
ACGAAGAAACCGAATGCTGGCGGTGCTGATAGTCAAAGAAAGTTTGGTAGTAGAGAGGATGATAAAAACAAGCTCCATACTCACTCTTATTGTTGTCTAG
ATTATGCGCAGATATATGATGTTGTTAGGTATAGATTGCACCGCATGAGGAAAATGATCAAGGATGAATTGGAGAACAATAACGCTGTTCAACAGTATAT
ATGCCCCATCTGTGAAAGAAGATACAATGCTTTGGATGCACTGCGCTTGATTTCTCTAGTTGATGAAGACTTCCACTGTGAGAATTGTGATGGGGTACTT
GTGGCTGAAAGTGACAAGTTGGCTGCCCAAGAAGGAGGAGATGGAGATGACAATGCAAGGAAGCGGAGGCGTGAAAAATTGAAAGACATGCTTCAAAATA
TGGAGGTACAACTTAAGCCATTGATGGATCAACTTAGCAGAGTGAAAGATCTACCTATTCCTGAAATTGGAAGTCTTCAAGCATGGCAACTTCATGAAAA
TGCTGCTGGGCGTGCGACAAATGGTGATCCTAATTCCGATGATCATTTCAAATATTCTCAAGGACCAGGGTATGGTGGAACACCAATGCCATTTCTTGGC
GAGACAAAGGTCGAAGTCGCCTTTGCTGGTGATGAAAGCAAAGAGAATATCAAATCTGAAACTGCAAGTACAAGTCTAAAAGTATTACCACCATGGATGA
TCAAGCAGGGAATGAACCTTACAAAGGAGCAACGTGGAGAGGTCAAGCAGGAGAGTAAGATGGATAGCAGTTCGACAGCTGTAGAATTCTCAGATGAAAA
GAAGTCTGCTAAAGTGAATGGTGATAGTATAAAGGAGGAGTATGTTAAAGCTTATTATGCTGCTCTGCTTGAACAACAAAGACAGGCAGAAGAATCTGCT
AAGCAACAACAAGAGTTGTCTCAGACATCCATGTCCAATGGCCTTTCTGAATCATCTTCTAATCGTCAAGTGGGCATGAAATCCAAACGTGAGGAGGGTG
AGGGAGATGATGATGTTGAATGGGAAGAGGCTCCAATTGAAGGCAATACAAGTGAAAGTTACAGGCTCAATGATTTGAATGATGAAGCACCAGCTTCTGG
AGAGGAGGATGATGATATAGACTGGGAAGAAGGTTGA
AA sequence
>Potri.010G102000.1 pacid=42797404 polypeptide=Potri.010G102000.1.p locus=Potri.010G102000 ID=Potri.010G102000.1.v4.1 annot-version=v4.1
MDMNTTISVEPFKRLVKLAARAFYDDVSTKGENQSKNNARGDNKGIAVVVLDALTRRLWVNEEGLAKDLKIHIKQLRRILRLFEEDKLLTRAHRKETAKV
TKKPNAGGADSQRKFGSREDDKNKLHTHSYCCLDYAQIYDVVRYRLHRMRKMIKDELENNNAVQQYICPICERRYNALDALRLISLVDEDFHCENCDGVL
VAESDKLAAQEGGDGDDNARKRRREKLKDMLQNMEVQLKPLMDQLSRVKDLPIPEIGSLQAWQLHENAAGRATNGDPNSDDHFKYSQGPGYGGTPMPFLG
ETKVEVAFAGDESKENIKSETASTSLKVLPPWMIKQGMNLTKEQRGEVKQESKMDSSSTAVEFSDEKKSAKVNGDSIKEEYVKAYYAALLEQQRQAEESA
KQQQELSQTSMSNGLSESSSNRQVGMKSKREEGEGDDDVEWEEAPIEGNTSESYRLNDLNDEAPASGEEDDDIDWEEG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G03280 Transcription factor TFIIE, al... Potri.010G102000
[exp]
0 1
AT4G26450 WIP1 unknown protein Potri.011G169200
[exp]
2.82 0.8874
AT1G55870 ATPARN, AHG2 ARABIDOPSIS THALIANA POLY\(A\)... Potri.001G368401
[exp]
3.00 0.8852
AT4G02940 oxidoreductase, 2OG-Fe(II) oxy... Potri.014G137700
[exp]
5.19 0.8667
AT4G13970 zinc ion binding (.1) Potri.014G054600
[exp]
6.00 0.8798
AT5G24810 ABC1 family protein (.1.2) Potri.018G003400
[exp]
6.48 0.8867
AT1G66140 C2H2ZnF ZFP4 zinc finger protein 4 (.1) Potri.008G138000
[exp]
9.43 0.8109
AT5G29000 GARP PHL1 PHR1-like 1, Homeodomain-like ... Potri.013G048000
[exp]
10.67 0.8589
AT3G13080 EST2, ATMRP3, A... MULTIDRUG RESISTANCE PROTEIN 3... Potri.001G362300
[exp]
12.36 0.8602 Pt-MRP3.1
AT5G38640 NagB/RpiA/CoA transferase-like... Potri.012G059300
[exp]
12.96 0.8625
AT5G46840 RNA-binding (RRM/RBD/RNP motif... Potri.001G140300
[exp]
13.49 0.8626

Potri.010G102000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.