Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ASB1,Pt-TRP4.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25220 401 / 2e-142 WEI7, TRP4, ASB1 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) AT5G57890 399 / 8e-142 Glutamine amidotransferase type 1 family protein (.1) AT1G25155 379 / 9e-135 Glutamine amidotransferase type 1 family protein (.1) AT1G24909 379 / 9e-135 Glutamine amidotransferase type 1 family protein (.1) AT1G25083 379 / 9e-135 Glutamine amidotransferase type 1 family protein (.1) AT1G24807 370 / 7e-131 Glutamine amidotransferase type 1 family protein (.1) AT2G28880 103 / 1e-24 ADCS, EMB1997 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) AT3G27740 76 / 2e-15 VEN6, CARA VENOSA 6, carbamoyl phosphate synthetase A (.1.2) AT1G63660 46 / 2e-05 GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.1), GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G138800 [exp] 515 / 0 AT1G25220 404 / 2e-143 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) Potri.010G221500 [exp] 105 / 2e-25 AT2G28880 1016 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) Potri.003G080900 [exp] 70 / 2e-13 AT3G27740 647 / 0.0 VENOSA 6, carbamoyl phosphate synthetase A (.1.2) Potri.001G153400 [exp] 67 / 1e-12 AT3G27740 676 / 0.0 VENOSA 6, carbamoyl phosphate synthetase A (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013241 [exp] 410 / 5e-146 AT1G25220 368 / 2e-129 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) Lus10030761 [exp] 401 / 6e-142 AT1G25220 363 / 9e-127 WEAK ETHYLENE INSENSITIVE7, TRYPTOPHAN BIOSYNTHESIS 4, anthranilate synthase beta subunit 1 (.1.2) Lus10041403 [exp] 100 / 3e-23 AT2G28880 1078 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) Lus10036525 [exp] 99 / 4e-23 AT2G28880 1026 / 0.0 embryo defective 1997, aminodeoxychorismate synthase, para-aminobenzoate (PABA) synthase family protein (.1) Lus10018639 [exp] 71 / 1e-13 AT3G27740 676 / 0.0 VENOSA 6, carbamoyl phosphate synthetase A (.1.2) Lus10039874 [exp] 65 / 1e-11 AT3G27740 678 / 0.0 VENOSA 6, carbamoyl phosphate synthetase A (.1.2) Lus10032268 [exp] 51 / 4e-07 AT1G63660 910 / 0.0 GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.1), GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.2) Lus10024632 [exp] 49 / 2e-06 AT1G63660 909 / 0.0 GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.1), GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative (.2) Lus10014635 [exp] 42 / 0.0003 AT2G23970 233 / 8e-77 Class I glutamine amidotransferase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0014 [poplar] [flax] Glutaminase_I PF07722 [poplar] [flax] Peptidase_C26 Peptidase C26
Representative CDS sequence Show only first row Show all	>Potri.010G102200.1 pacid=42798548 polypeptide=Potri.010G102200.1.p locus=Potri.010G102200 ID=Potri.010G102200.1.v4.1 annot-version=v4.1 ATGGCTGCTGCAAGCATGGTACGTCAAACCGCTTGCAATCAATCAAAGCCCTCTCTTGCACTCAAAACCCAGCATGCCTCTCCTTTAAATCTCTTCTCAA TACCATCAAGATTGAGTTTTGGAGCAAACAGCGAAAAAGGGCTAGTAGTAAAATGTTCGGTGGCAGCTGCAGAACTCAATTCCAGGGTTGCGGCTTCTAA TGACAGGGGAATCAAGAATCCTATAATTGTCATTGACAATTATGACAGTTTCACTTATAATCTGTGCCAGTATATGGGAGAGGTGGGCTGCCATTTTGAG GTGTATCGGAATGACGAGTTAACTGTGGAGGATTTAGAAAGGAAAAAGCCAAGAGGCGTCCTCATATCCCCAGGCCCAGGAACACCCCAGGATTCTGGAA TTTCCCTACAGACGGTTCTAGAGCTTGGACCTACCGTGCCTTTGTTTGGTGTGTGTATGGGGTTGCAGTGCATTGGAGAGGCTTTTGGAGGAAAGATTGT GCGCTCACCTTATGGTGTCGTGCATGGAAAAGGTTCTCCTGTATATTATGACGAGAAGGGGGAAGATGGCTTGTTCGCTGGGTTGTCTAATCCTTTCACT GCTGGAAGATACCATAGCCTTGTGATTGAAAAAGAGAGTTTCCCTGGTGAAGAACTAGAGGTTACAGCATGGACTGAGGATGGCCTCATAATGGCTGCTC GCCATAGAAAATATAAGCATCTGCAGGGGGTGCAGTTCCATCCAGAAAGCATCATAACATCTGAAGGCAAGACAATTGTTAGGAATTTCATCAAAATGGT AGAGAGAAAAGAGGCTGAATCTGAGAACTAG
AA sequence Show only first row Show all	>Potri.010G102200.1 pacid=42798548 polypeptide=Potri.010G102200.1.p locus=Potri.010G102200 ID=Potri.010G102200.1.v4.1 annot-version=v4.1 MAAASMVRQTACNQSKPSLALKTQHASPLNLFSIPSRLSFGANSEKGLVVKCSVAAAELNSRVAASNDRGIKNPIIVIDNYDSFTYNLCQYMGEVGCHFE VYRNDELTVEDLERKKPRGVLISPGPGTPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPYGVVHGKGSPVYYDEKGEDGLFAGLSNPFT AGRYHSLVIEKESFPGEELEVTAWTEDGLIMAARHRKYKHLQGVQFHPESIITSEGKTIVRNFIKMVERKEAESEN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G25220		WEI7, TRP4, ASB...	WEAK ETHYLENE INSENSITIVE7, TR...		Potri.010G102200 [exp]	0	1	ASB1,Pt-TRP4.2
AT3G19360	C3HZnF		Zinc finger (CCCH-type) family...		Potri.004G169500 [exp]	3.16	0.7965
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Potri.015G147500 [exp]	9.84	0.8003
AT3G02870		VTC4	Inositol monophosphatase famil...		Potri.010G156300 [exp]	10.58	0.7123
AT2G01275			RING/FYVE/PHD zinc finger supe...		Potri.017G122300 [exp]	16.73	0.7295
AT3G59890			Dihydrodipicolinate reductase,...		Potri.017G001900 [exp]	22.91	0.7102
AT1G53700		PK3AT, WAG1	PROTEIN KINASE 3 ARABIDOPSIS T...		Potri.001G435900 [exp]	27.65	0.7225	Pt-PSPK3.1
AT5G24840			tRNA (guanine-N-7) methyltrans...		Potri.006G277100 [exp]	29.69	0.7302
AT5G57100			Nucleotide/sugar transporter f...		Potri.018G139500 [exp]	31.81	0.6698
AT1G54650			Methyltransferase family prote...		Potri.013G044300 [exp]	34.89	0.6967
AT3G02870		VTC4	Inositol monophosphatase famil...		Potri.010G156500 [exp]	36.78	0.6717

Compare expression of checked genes

Potri.010G102200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.