Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-EXGT.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14720 470 / 1e-167 ATXTH28, EXGT-A2, XTR2 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) AT2G01850 462 / 9e-165 ATXTH27, EXGT-A3 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) AT1G32170 359 / 5e-124 XTH30, XTR4 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) AT4G18990 328 / 2e-111 XTH29, XTR13 xyloglucan endotransglucosylase/hydrolase 29 (.1) AT1G10550 259 / 3e-85 XTH33, XET xyloglucan:xyloglucosyl transferase 33 (.1) AT4G13090 246 / 4e-80 XTH2 xyloglucan endotransglucosylase/hydrolase 2 (.1) AT4G13080 228 / 3e-73 XTH1 xyloglucan endotransglucosylase/hydrolase 1 (.1) AT3G25050 218 / 2e-69 XTH3 xyloglucan endotransglucosylase/hydrolase 3 (.1) AT1G11545 210 / 4e-66 XTH8 xyloglucan endotransglucosylase/hydrolase 8 (.1) AT2G06850 207 / 5e-65 XTH4, EXT, EXGT-A1 endoxyloglucan transferase A1, xyloglucan endotransglucosylase/hydrolase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G138400 [exp] 598 / 0 AT1G14720 467 / 2e-166 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Potri.001G136100 [exp] 375 / 4e-130 AT1G32170 469 / 6e-167 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Potri.003G097300 [exp] 363 / 2e-125 AT1G32170 436 / 8e-154 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Potri.009G163850 [exp] 322 / 6e-110 AT2G01850 319 / 6e-109 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) Potri.014G115000 [exp] 267 / 4e-88 AT1G10550 367 / 9e-128 xyloglucan:xyloglucosyl transferase 33 (.1) Potri.002G244200 [exp] 223 / 5e-71 AT4G13090 321 / 3e-110 xyloglucan endotransglucosylase/hydrolase 2 (.1) Potri.006G122900 [exp] 198 / 1e-61 AT2G36870 478 / 4e-172 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Potri.016G098600 [exp] 197 / 3e-61 AT2G36870 477 / 1e-171 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Potri.004G021000 [exp] 197 / 4e-61 AT1G11545 498 / 3e-180 xyloglucan endotransglucosylase/hydrolase 8 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013240 [exp] 479 / 3e-171 AT2G01850 456 / 2e-162 XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27, endoxyloglucan transferase A3 (.1) Lus10030760 [exp] 476 / 4e-170 AT1G14720 456 / 3e-162 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Lus10029000 [exp] 476 / 5e-170 AT1G14720 457 / 1e-162 xyloglucan endotransglycosylase related 2, ENDOXYLOGLUCAN TRANSFERASE A2, xyloglucan endotransglucosylase/hydrolase 28 (.1) Lus10010427 [exp] 359 / 1e-123 AT1G32170 462 / 5e-164 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Lus10012115 [exp] 313 / 8e-106 AT1G32170 401 / 9e-141 xyloglucan endotransglycosylase 4, xyloglucan endotransglucosylase/hydrolase 30 (.1) Lus10029165 [exp] 266 / 9e-88 AT1G10550 405 / 5e-143 xyloglucan:xyloglucosyl transferase 33 (.1) Lus10013000 [exp] 259 / 5e-85 AT1G10550 397 / 9e-140 xyloglucan:xyloglucosyl transferase 33 (.1) Lus10041341 [exp] 212 / 1e-66 AT2G36870 421 / 2e-149 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10021422 [exp] 209 / 8e-66 AT2G36870 417 / 4e-148 xyloglucan endotransglucosylase/hydrolase 32 (.1.2) Lus10016144 [exp] 209 / 2e-65 AT2G36870 416 / 1e-147 xyloglucan endotransglucosylase/hydrolase 32 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [poplar] [flax] Concanavalin PF00722 [poplar] [flax] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [poplar] [flax] Concanavalin PF06955 [poplar] [flax] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Potri.010G102300.1 pacid=42796870 polypeptide=Potri.010G102300.1.p locus=Potri.010G102300 ID=Potri.010G102300.1.v4.1 annot-version=v4.1 ATGGCGTGCTCTTATCTTGGTCCTTGTTTTCTCTTAATTTGCTCTCTTCTTGCGCTTTTTGTTTCTGGGTCTCAAATTCAAAGAACTTCATTGCCTATTA TATCCTTTGATGAAGGATACACCCAACTTTTTGGGGATGATAATCTGGTCATGTACAGAGATGGAAAGAGAGTCCATTTATCTCTAGATGAGAGGACAGG GTCGGGATTTGTTTCTCAGGACTTATACCTACATGGATACTTCAGTGCTTCTATCAAGTTGCCAGCAGATTATACTGCTGGAGTTGTGGTTGCTTTTTAT ATGTCAAATGGTGACATATTCGAGAAGAACCATGATGAAATTGACTTCGAGTTCTTGGGTAACATAAGAGGCAAAGATTGGAGGATCCAGACAAACATTT ATGGCAATGGCAGCACTAGTGCCGGCAGAGAAGAGAGATACAGCCTCTGGTTCGATCCCTCTGATGATTTCCATCAGTATAGCATTCTCTGGACCAATTC TCAGATCATATTTTACGTGGACAACATTCCAATTAGAGAGGTTAAAAGAACAGAATCTATGGGAGCAGATTTCCCTTCCAAGCCAATGTCTTTGTATGCA ACGATATGGGATGGGTCTGATTGGGCTACTAATGGAGGCAAATATAGAGTGAATTACAAATACGCCCCTTATGTCGCTGAATTTTCTGACCTTGTTCTGC ACGGGTGTGCTGTCGATCCTGTTGAGCAGTTTCCAAGATGCGATAATACAGAGAGTTCTCAGGCGATCCCCACCGGTGTCACACCAGTGCAAAGAATTAA GATGGAGAGCTTTAGGGCCAAGTTTATGACATATTCTTATTGCTATGATCGGGTTCGGTACAGGGCTCCCCCATCAGAGTGTGTGATCAATACCAAAGAA GCAGACCGACTCAAATCTTACGATCCTGTTACTTTTGGCGGAGGCCGGCGCCACCACGGGAAACGACACCACCATAGTCGGTCAAGTCATGCTGAAGTCA TTTCCATTTAA
AA sequence Show only first row Show all	>Potri.010G102300.1 pacid=42796870 polypeptide=Potri.010G102300.1.p locus=Potri.010G102300 ID=Potri.010G102300.1.v4.1 annot-version=v4.1 MACSYLGPCFLLICSLLALFVSGSQIQRTSLPIISFDEGYTQLFGDDNLVMYRDGKRVHLSLDERTGSGFVSQDLYLHGYFSASIKLPADYTAGVVVAFY MSNGDIFEKNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSAGREERYSLWFDPSDDFHQYSILWTNSQIIFYVDNIPIREVKRTESMGADFPSKPMSLYA TIWDGSDWATNGGKYRVNYKYAPYVAEFSDLVLHGCAVDPVEQFPRCDNTESSQAIPTGVTPVQRIKMESFRAKFMTYSYCYDRVRYRAPPSECVINTKE ADRLKSYDPVTFGGGRRHHGKRHHHSRSSHAEVISI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14720		ATXTH28, EXGT-A...	xyloglucan endotransglycosylas...		Potri.010G102300 [exp]	0	1	Pt-EXGT.3
AT3G48530		KING1	SNF1-related protein kinase re...		Potri.015G094700 [exp]	2.00	0.7521
AT1G33055			unknown protein		Potri.001G452500 [exp]	7.21	0.6911
AT1G67560		ATLOX6, LOX6	Arabidopsis thaliana lipoxygen...		Potri.008G178000 [exp]	8.94	0.6802
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Potri.005G014200 [exp]	12.56	0.7203
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Potri.004G070500 [exp]	12.60	0.7050
AT5G10860		CBSX3	CBS domain containing protein ...		Potri.017G000100 [exp]	13.49	0.6554
AT1G32090			early-responsive to dehydratio...		Potri.003G099800 [exp]	15.68	0.6882
AT1G24625	C2H2ZnF	ZFP7	zinc finger protein 7 (.1)		Potri.001G298700 [exp]	22.13	0.6650
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Potri.004G059000 [exp]	26.07	0.6444	GSK1.2
AT2G33170			Leucine-rich repeat receptor-l...		Potri.003G174900 [exp]	32.78	0.6895

Compare expression of checked genes

Potri.010G102300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.