Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01820 1050 / 0 CYCJ18 Leucine-rich repeat protein kinase family protein (.1) AT1G66150 634 / 0 TMK1 transmembrane kinase 1 (.1) AT3G23750 531 / 1e-174 Leucine-rich repeat protein kinase family protein (.1) AT1G24650 528 / 4e-174 Leucine-rich repeat protein kinase family protein (.1) AT5G18610 249 / 1e-72 Protein kinase superfamily protein (.1.2) AT3G07070 246 / 1e-72 Protein kinase superfamily protein (.1) AT1G70460 253 / 2e-72 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G52290 247 / 4e-72 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT1G07870 244 / 5e-72 Protein kinase superfamily protein (.1.2) AT3G24790 242 / 7e-72 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G137801 [exp] 1462 / 0 AT1G66150 1101 / 0.0 transmembrane kinase 1 (.1) Potri.017G134900 [exp] 687 / 0 AT1G66150 1333 / 0.0 transmembrane kinase 1 (.1) Potri.004G084000 [exp] 682 / 0 AT1G66150 730 / 0.0 transmembrane kinase 1 (.1) Potri.018G141000 [exp] 539 / 1e-177 AT3G23750 650 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G203500 [exp] 538 / 6e-177 AT2G01820 528 / 5e-173 Leucine-rich repeat protein kinase family protein (.1) Potri.016G070500 [exp] 535 / 1e-175 AT1G66150 778 / 0.0 transmembrane kinase 1 (.1) Potri.006G073900 [exp] 529 / 1e-173 AT3G23750 630 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G035900 [exp] 516 / 7e-169 AT3G23750 1044 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G217700 [exp] 517 / 1e-168 AT1G66150 724 / 0.0 transmembrane kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039038 [exp] 1141 / 0 AT1G66150 1356 / 0.0 transmembrane kinase 1 (.1) Lus10027336 [exp] 1136 / 0 AT1G66150 1348 / 0.0 transmembrane kinase 1 (.1) Lus10003807 [exp] 1061 / 0 AT1G66150 1221 / 0.0 transmembrane kinase 1 (.1) Lus10034432 [exp] 996 / 0 AT1G66150 979 / 0.0 transmembrane kinase 1 (.1) Lus10031944 [exp] 609 / 0 AT2G01820 1008 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10010472 [exp] 586 / 0 AT1G66150 1067 / 0.0 transmembrane kinase 1 (.1) Lus10019131 [exp] 580 / 0 AT1G66150 981 / 0.0 transmembrane kinase 1 (.1) Lus10016952 [exp] 519 / 9e-170 AT1G66150 806 / 0.0 transmembrane kinase 1 (.1) Lus10021275 [exp] 518 / 2e-169 AT1G66150 804 / 0.0 transmembrane kinase 1 (.1) Lus10023220 [exp] 434 / 4e-137 AT3G23750 903 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.010G103000.1 pacid=42799760 polypeptide=Potri.010G103000.1.p locus=Potri.010G103000 ID=Potri.010G103000.1.v4.1 annot-version=v4.1 ATGGGTGTTTGGCTTTTCACCAATTTCTCACTCTTTCTTTCCCTACTACTATGTCTAGCCAATTCTCAGCAAAACGACGACGCAGCAGCCATGATGAAAC TGAGAGGCAGCCTTGGCAACCCATCTACTCTCGGCTGGTCTGGCTCTGACCCATGTAACTGGCTCCACGTGGGTTGCTTAGATAACCGGGTCACTCGGAT CCAAATAGGCAATCAGAATTTACAAGGTACTCTCCCCCCAGAACTCAAAGACTTGACTCAGCTAACTCGGTTCGAGGTCATGAACAACCAGTTAACGGGC GCATTACCGAGTTTATCAGGTTTAAGCTTTCTCCAAGTCCTCTTTTTACATAACAACACTCTCTCTTCAATTCCTCCTGATTTTTTCGCCGGAATGACGT CCTTAACCAGCGTCTATTTGGATTACAATCCTTTTGAATCATGGGAGATACCGGAGAGTCTCAAGGATGCTAGTGCTTTGAAGGAATTCTCGGCGAACGG TGCTAATGTAGCTGGCAAAATCCCTGAATTTTTTAACAGCGATGTGTTTCCTGGCATGGAGACTTTGCATTTAGCTTTTAATTATTTTGAGGGTGGATTG CCCCTCAATTTTTCGGGGTCTACTATACAATCTTTATGGCTTAACGGCCAAAAGAGTAATTCGAGGCTAAATGGTACTATTTCTATCCTGCAAAACATGA CTTCATTGAAAGAAATTTGGCTCCAAGGAAATCATTTTACGGGTCCTTTGCCTGATTTGTCTGGGATGATTTCATTGGAAGATTTGAATTTAAGGGATAA TAGCTTGACGGGTGTTGTTCCGCCATCATTGCTGAACATTTCTACACTTCGTGTTGTCAATTTCACTAATAATAAGCTCCAGGGACCGACGCCCAGTTTT GCTAGGACAGTTGATGCGGATATGATTCCCGGGACTAATAATTTTTGTTTGGATAATCCTGGTGTTGCTTGTAATGCTACTGTTAATGTTTTGTTGTCGG TTGCAAAAAACTTTGGATACCCTGCTAGTCTTGCTGACCTTTGGAAAGGAAATGATCCTTGCACATCCACCCAAGCCTGGAAAGGAATTACTTGTGGTGG AGGGGATATTTTGGTGATTAACTTGAAGAAAGCAGGACTTAGCGGTACCATTTCTTCAGACTTTTCTTTGATTTCGAGACTACAGAAATTGATTCTTTCT GATAACATGCTTACTGGTACGATACCCGATGAGCTTATAAGTTTGTCTAATCTTGCTTTATTAGATGTCTCGAATAATAAACTCTCTGGTCAAATACCCA AGTTTAGAAGTAATGTGCAAGTGGAATATGGTGGAAATCCTGATATTGGAAAGATTAACACTAGCTATGCTCCCCCTGGTGCTCCTGGAAGTACACCTTC TGGTACAGGTGGTGGTTCGGATGGTAGTGGAAACAAGAACTCAGCTAGTGGAAAGATTGTGGGTTCTGTGATTGGTGCTGTTGGTGTTGTATGTGTGGTT GGGTTAGGTGTATTCTTTTATAGTAAGAAACAAAAGCGATCTAGTAAGGTTCAGAGTCCAAATATGATGATTATTCACCCGCGCCGCTCATGGGATCAGG ATGAGGTGAAAATCACTGTTGCTGGATCAAGTGCAAATAGTGGAGTTGAGAGCTTTACTGATAGTGTTGGACCCAGTGACATTCAAGTGGTCAGGACTGA GAATATGGTGATCTCAATTCAAGTTTTAAGAAATGTTACGAATAATTTTAGTGAAGAAAATATATTGGGAAGAGGTGGATTTGGGACTGTATACAAGGGG GAGTTGCATGATGGAACAAAAATTGCAGTAAAGAGGATGGAGTCGGGAGTGATTAGCGAGAAGGGTCTAGCAGAGTTCATGTCTGAGATTGCAGTGCTTA CCAAGGTTCGACACCGCCATCTAGTCGCCCTTCTAGGATATTGCTTGGATGGAAATGAGAGGCTTCTTGTTTATGAATATATGCCTCGGGGGACTCTTAG CAGTCATCTTTTTAGTTGGAAGGAGGAGGGTGTCAAACCGCTCGACTGGACTAGAAGATTAACTATTGGCTTGGATGTTGCTAGAGGCGTTGAATACCTA CATGGGCTGGCACATCAAAGTTTTATTCACAGGGATCTCAAGCCTTCCAATATTCTTCTAGGAGATGATATGCGGGCCAAAGTGGCTGATTTTGGATTGG TTCGTCTTGCTCCAGAAGGGAAAGCTTCAATTGAAACGAGACTAGCTGGAACTTTTGGATATCTTGCTCCTGAATATGCAGTGACTGGTCGAGTGACTAC CAAGGTTGATGTGTTCAGCTTTGGAGTCATATTAATGGAGATGATCACAGGAAGGAAGGCACTGGATGAGACCCAGCCTGAGGACAGCTTGCATCTTGTT ACTTGGTTCCGTAGGATGCACATCAACAAAGACACGTTCCGTAAAACCATTGACCCAACCATTAATCTTGATGAGGAAACCCTTGGTAGCATTAGCACAG TTGCCGATCTAGCAGGCCACTGCACTGCAAGGGAGCCCTACCAAAGGCCAGACATGGGTCACGTGGTTAATGTTCTGTCATCTCTTGTTGAGATTTGGAA ACCAGCAGAACCAGATTCTGATGAAATGTATGGGATTGATTTTGAGATGCCCTTGCCCGAAGTGCTCCTGAAGTGGCAGGCATTTGATGGAAGCAGCTCT TCATTTCTTGCCAGTGGGGATAATACCCAGACTAGCATACCTACTCGGCCATCTGGCTTTGCGGAGTCGTTTACATCAGCAGATGGACGGTAG
AA sequence Show only first row Show all	>Potri.010G103000.1 pacid=42799760 polypeptide=Potri.010G103000.1.p locus=Potri.010G103000 ID=Potri.010G103000.1.v4.1 annot-version=v4.1 MGVWLFTNFSLFLSLLLCLANSQQNDDAAAMMKLRGSLGNPSTLGWSGSDPCNWLHVGCLDNRVTRIQIGNQNLQGTLPPELKDLTQLTRFEVMNNQLTG ALPSLSGLSFLQVLFLHNNTLSSIPPDFFAGMTSLTSVYLDYNPFESWEIPESLKDASALKEFSANGANVAGKIPEFFNSDVFPGMETLHLAFNYFEGGL PLNFSGSTIQSLWLNGQKSNSRLNGTISILQNMTSLKEIWLQGNHFTGPLPDLSGMISLEDLNLRDNSLTGVVPPSLLNISTLRVVNFTNNKLQGPTPSF ARTVDADMIPGTNNFCLDNPGVACNATVNVLLSVAKNFGYPASLADLWKGNDPCTSTQAWKGITCGGGDILVINLKKAGLSGTISSDFSLISRLQKLILS DNMLTGTIPDELISLSNLALLDVSNNKLSGQIPKFRSNVQVEYGGNPDIGKINTSYAPPGAPGSTPSGTGGGSDGSGNKNSASGKIVGSVIGAVGVVCVV GLGVFFYSKKQKRSSKVQSPNMMIIHPRRSWDQDEVKITVAGSSANSGVESFTDSVGPSDIQVVRTENMVISIQVLRNVTNNFSEENILGRGGFGTVYKG ELHDGTKIAVKRMESGVISEKGLAEFMSEIAVLTKVRHRHLVALLGYCLDGNERLLVYEYMPRGTLSSHLFSWKEEGVKPLDWTRRLTIGLDVARGVEYL HGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKASIETRLAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMEMITGRKALDETQPEDSLHLV TWFRRMHINKDTFRKTIDPTINLDEETLGSISTVADLAGHCTAREPYQRPDMGHVVNVLSSLVEIWKPAEPDSDEMYGIDFEMPLPEVLLKWQAFDGSSS SFLASGDNTQTSIPTRPSGFAESFTSADGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Potri.010G103000 [exp]	0	1
AT5G55540		LOP1, TRN1	LOPPED 1, tornado 1 (.1)		Potri.001G361200 [exp]	1.73	0.8317
AT5G58320			Kinase interacting (KIP1-like)...		Potri.019G061600 [exp]	5.47	0.8024
AT3G09070			Protein of unknown function (D...		Potri.016G111400 [exp]	5.47	0.7914
AT2G46920		POL	poltergeist, Protein phosphata...		Potri.002G185000 [exp]	5.65	0.7540	POL.2
AT1G79910			Regulator of Vps4 activity in ...		Potri.003G054500 [exp]	7.93	0.7405
AT1G10120	bHLH	bHLH074, CIB4	basic helix-loop-helix (bHLH) ...		Potri.002G114700 [exp]	10.00	0.7818
AT3G44716			unknown protein		Potri.009G148200 [exp]	10.67	0.7616
AT3G55550			Concanavalin A-like lectin pro...		Potri.016G101000 [exp]	11.40	0.7133	Pt-LECRK7.1
AT4G26490			Late embryogenesis abundant (L...		Potri.011G165500 [exp]	12.24	0.7770
AT5G12330		LRP1	LATERAL ROOT PRIMORDIUM 1, Lat...		Potri.001G027700 [exp]	13.85	0.7274

Compare expression of checked genes

Potri.010G103000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.