Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37490 315 / 1e-103 ARM repeat superfamily protein (.1) AT1G66160 313 / 4e-103 ATCMPG1 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2) AT3G02840 232 / 2e-72 ARM repeat superfamily protein (.1) AT3G52450 186 / 7e-54 PUB22 plant U-box 22 (.1) AT2G35930 184 / 1e-53 PUB23 plant U-box 23 (.1) AT1G49780 179 / 1e-51 PUB26 plant U-box 26 (.1) AT3G19380 175 / 5e-50 PUB25 plant U-box 25 (.1) AT3G11840 132 / 1e-33 PUB24 plant U-box 24 (.1) AT5G64660 112 / 3e-27 ATCMPG2 "CYS, MET, PRO, and GLY protein 2", CYS, MET, PRO, and GLY protein 2 (.1) AT2G28830 112 / 2e-26 AtPUB12 PLANT U-BOX 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G137700 [exp] 737 / 0 AT5G37490 333 / 9e-111 ARM repeat superfamily protein (.1) Potri.012G042600 [exp] 426 / 7e-147 AT5G37490 294 / 2e-95 ARM repeat superfamily protein (.1) Potri.004G083900 [exp] 422 / 3e-145 AT5G37490 354 / 8e-119 ARM repeat superfamily protein (.1) Potri.015G031000 [exp] 418 / 4e-144 AT5G37490 323 / 9e-107 ARM repeat superfamily protein (.1) Potri.017G135000 [exp] 410 / 6e-141 AT5G37490 375 / 4e-127 ARM repeat superfamily protein (.1) Potri.006G202600 [exp] 206 / 5e-62 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.016G069400 [exp] 199 / 5e-59 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.009G016200 [exp] 188 / 5e-55 AT2G35930 475 / 4e-167 plant U-box 23 (.1) Potri.009G100200 [exp] 187 / 2e-54 AT1G49780 515 / 0.0 plant U-box 26 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001079 [exp] 321 / 1e-105 AT5G37490 290 / 1e-93 ARM repeat superfamily protein (.1) Lus10016166 [exp] 182 / 1e-52 AT3G52450 462 / 2e-161 plant U-box 22 (.1) Lus10021267 [exp] 182 / 1e-52 AT2G35930 474 / 5e-167 plant U-box 23 (.1) Lus10029393 [exp] 181 / 6e-52 AT3G52450 462 / 1e-161 plant U-box 22 (.1) Lus10013584 [exp] 180 / 8e-52 AT2G35930 471 / 2e-165 plant U-box 23 (.1) Lus10040124 [exp] 168 / 1e-49 AT1G66160 154 / 6e-45 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2) Lus10040125 [exp] 163 / 4e-47 AT3G02840 164 / 1e-48 ARM repeat superfamily protein (.1) Lus10005810 [exp] 135 / 4e-35 AT5G64660 400 / 7e-138 "CYS, MET, PRO, and GLY protein 2", CYS, MET, PRO, and GLY protein 2 (.1) Lus10029395 [exp] 128 / 2e-32 AT3G11840 296 / 8e-96 plant U-box 24 (.1) Lus10004191 [exp] 126 / 4e-31 AT3G11840 300 / 2e-95 plant U-box 24 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.010G103100.1 pacid=42798586 polypeptide=Potri.010G103100.1.p locus=Potri.010G103100 ID=Potri.010G103100.1.v4.1 annot-version=v4.1 ATGATGATCTCTACATGGAGAAAGCGAAGAGCAGCTCGCCTGGCCGGCAAGCGGCGACTAGAGAGCGAAATGGGAGACATCGAAGTGACAATACCAAATC ATTTTCGATGCCCGATTTCGCTGGAATTGATGAAAGATCCGGTCACCATGTCAAGTGGGATTACTTACGATCGTGAGAGCATCGAGAAGTGGATAGAGGC TGGGAATGTGACCTGCCCCGTTACCAACAGGGTCTTGAGGAGCCTTGATCCTATACCAAATCACACCATACGTAAAATGATACAAGATTGGTGCGTCACA AATAGTTCTTACGGGATAGAAAGAATTCCAACGCCTAGAATTCCCGTGAGTTCTGAAGAGGCTTTGGAGATTCATCTCAAAATTAAAACAGCTTGTAAAA AAGGAGATCAGATTGGGTGCCAAAATTTGGCCGCCAAGATTAAGGCTCTAGCGAAGGAGAGCGAACGTAACAAGAGCTGCCTCGTGGCTACTGGAACGGC TGGTGTTTTATCATATGCTTTTGATGAGTTTTCAAAAGCTTCTTTCGAAGAAAATGTTGCGGTCCTGGACGAAATACTGTCCAGTTTGGCAGTACTTCTG CATCATGACAAGGCAACGAATTGGCCTGGCTCAGATGCATCTATAGATCGCATCGTGTTGTTCTTGAAAAGTGAGGATTTGTCTGCGAGAAGAAATGCAG TTCTGGTGCTAAAAGAGCTTGTTCCAATATTGGATTACAGAAAAGTAGACATGTTACTAGAAATTGAAGGAGCCATGGAAGCGTTGTTTAAGCTAATTAA GGCACCCATTTGTCATGCTGCAACAAAAGCTTCATTAATGGTCATTTATCATATGGTCACATCACCATCTCCTTCAAACGCAAAGATCATAGCTAAGTTT GTTGATTTGGGTTTGGTCTCGTTGCTGTTAGAAATGCTTGTAGACGCAGAAAGAAGTTTATGTGAGAAGGCGTTGGGCGTTCTTGATGGAATTTGTGGCA GTGATCAAGGGAGAGAGGAGGCATACAATCATGCTCTCACAATACCAGTTCTCGTCAGGAAAATACACCGAGTCTCAGACTTGGCAATGAAGTTCTCTGT CTCTATTCTATTTAAACTCTGCATGAATGAGAAGAGAGAAAATGGAGGTGTTCTAGTCGAGGCTATTCAAAGGAATGCTTTTGAAAAGCTTTTGGTTCTC TTACAGGTTGGCTGTGATGAGAGAACAAAGGAGAAGGCAACTCAGCTGTTGAGGGTGTTGAATGCTTATAGAAGCAGTGTGGACTGTATCGATTCTGTAG ATTTCAAGAATGTCAAAAGGCCCTTTTAA
AA sequence Show only first row Show all	>Potri.010G103100.1 pacid=42798586 polypeptide=Potri.010G103100.1.p locus=Potri.010G103100 ID=Potri.010G103100.1.v4.1 annot-version=v4.1 MMISTWRKRRAARLAGKRRLESEMGDIEVTIPNHFRCPISLELMKDPVTMSSGITYDRESIEKWIEAGNVTCPVTNRVLRSLDPIPNHTIRKMIQDWCVT NSSYGIERIPTPRIPVSSEEALEIHLKIKTACKKGDQIGCQNLAAKIKALAKESERNKSCLVATGTAGVLSYAFDEFSKASFEENVAVLDEILSSLAVLL HHDKATNWPGSDASIDRIVLFLKSEDLSARRNAVLVLKELVPILDYRKVDMLLEIEGAMEALFKLIKAPICHAATKASLMVIYHMVTSPSPSNAKIIAKF VDLGLVSLLLEMLVDAERSLCEKALGVLDGICGSDQGREEAYNHALTIPVLVRKIHRVSDLAMKFSVSILFKLCMNEKRENGGVLVEAIQRNAFEKLLVL LQVGCDERTKEKATQLLRVLNAYRSSVDCIDSVDFKNVKRPF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G37490			ARM repeat superfamily protein...		Potri.010G103100 [exp]	0	1
AT3G59080			Eukaryotic aspartyl protease f...		Potri.005G204600 [exp]	7.74	0.8340
AT3G59880			unknown protein		Potri.007G145500 [exp]	8.00	0.8715
AT5G06740			Concanavalin A-like lectin pro...		Potri.006G193000 [exp]	8.36	0.8912
AT5G57850			D-aminoacid aminotransferase-l...		Potri.011G115000 [exp]	10.63	0.7743
AT1G06135			unknown protein		Potri.013G043600 [exp]	14.00	0.8382
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.003G098900 [exp]	16.94	0.8675
AT3G01420		PADOX-1, ALPHA-...	plant alpha dioxygenase 1, alp...		Potri.008G106400 [exp]	17.17	0.8070	Pt-PIOX.1
AT2G38790			unknown protein		Potri.008G025200 [exp]	22.97	0.8618
AT2G42360			RING/U-box superfamily protein...		Potri.019G091400 [exp]	25.80	0.8677
AT2G31335			unknown protein		Potri.019G012700 [exp]	26.00	0.8687

Compare expression of checked genes

Potri.010G103100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.