Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03050 125 / 3e-31 ENTH/ANTH/VHS superfamily protein (.1) AT2G01600 121 / 7e-30 ENTH/ANTH/VHS superfamily protein (.1) AT1G14910 122 / 9e-30 ENTH/ANTH/VHS superfamily protein (.1) AT5G57200 121 / 9e-30 ENTH/ANTH/VHS superfamily protein (.1) AT1G05020 121 / 1e-29 ENTH/ANTH/VHS superfamily protein (.1) AT4G02650 115 / 2e-27 ENTH/ANTH/VHS superfamily protein (.1) AT5G35200 113 / 4e-27 ENTH/ANTH/VHS superfamily protein (.1) AT4G25940 110 / 6e-26 ENTH/ANTH/VHS superfamily protein (.1) AT1G33340 94 / 8e-21 ENTH/ANTH/VHS superfamily protein (.1) AT4G32285 92 / 5e-20 ENTH/ANTH/VHS superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G137600 [exp] 587 / 0 AT4G32285 131 / 8e-33 ENTH/ANTH/VHS superfamily protein (.1.2) Potri.014G158600 [exp] 143 / 2e-37 AT1G05020 493 / 2e-167 ENTH/ANTH/VHS superfamily protein (.1) Potri.002G224500 [exp] 141 / 2e-36 AT1G05020 500 / 2e-170 ENTH/ANTH/VHS superfamily protein (.1) Potri.010G110000 [exp] 128 / 3e-32 AT2G01600 732 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G128200 [exp] 127 / 1e-31 AT4G32285 626 / 0.0 ENTH/ANTH/VHS superfamily protein (.1.2) Potri.008G132100 [exp] 126 / 2e-31 AT2G01600 749 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G066900 [exp] 123 / 3e-30 AT4G32285 665 / 0.0 ENTH/ANTH/VHS superfamily protein (.1.2) Potri.006G118100 [exp] 120 / 2e-29 AT1G03050 605 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G142800 [exp] 115 / 9e-28 AT5G57200 655 / 0.0 ENTH/ANTH/VHS superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035340 [exp] 147 / 4e-38 AT1G05020 489 / 1e-164 ENTH/ANTH/VHS superfamily protein (.1) Lus10034610 [exp] 125 / 6e-31 AT2G01600 765 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10021796 [exp] 124 / 2e-30 AT2G01600 756 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10013469 [exp] 120 / 3e-29 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10025462 [exp] 120 / 4e-29 AT4G25940 685 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10007933 [exp] 120 / 5e-29 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10029998 [exp] 120 / 6e-29 AT1G05020 437 / 5e-139 ENTH/ANTH/VHS superfamily protein (.1) Lus10038122 [exp] 114 / 4e-27 AT5G35200 714 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10005184 [exp] 110 / 9e-26 AT5G35200 702 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10019402 [exp] 107 / 5e-25 AT2G25430 580 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [poplar] [flax] ENTH_VHS PF07651 [poplar] [flax] ANTH ANTH domain
Representative CDS sequence Show only first row Show all	>Potri.010G103200.2 pacid=42798644 polypeptide=Potri.010G103200.2.p locus=Potri.010G103200 ID=Potri.010G103200.2.v4.1 annot-version=v4.1 ATGCACAAGCGATTCAGGCAAGTTTTTTGTGCTCTAAAGGAGCACACCTCTGTAAGTTATGCCAAAATCGCCACATTTGGAGGGTTTTGTGATGTTGATC TCATAATTGTCAAAGCAACTGCTCCTGATGACTTACCATTGCCTGAAAAATACATGCACGAGCTCGTGAAGATATTTTCCTTCTCTAACTCATCATTTCA CTCCTTTTCTCTTAGCTTCACTCGCCGTTTTGGCAATACTCGATCCTGGAAAGTTGCTCTCAAATGCCTCATTCTCCTCAACCGCTTGCTCAGGTCATTG CCTGAAGATAGCCCTGTTCGGGCAGAACTATTATGGATTAGATCCAATGGCTTGCTCTCTCTCTATCCATGTCATTTCCGAGACGATTCATCTTCAAATC CTGAAGCTTACACCGTGTTTATTAGGTCCTACGCGCAATTACTCGACCAATCTCTTGATTGCTTTTCCTTGGACAACAAGGCAACAGAGGAAGAAGTGAT GCATGAGAGCTTACAGCATAAAATAAAACAAGTGAGTAGAAAGCTTGAGCTTTTGCCACGACTTCAAAGCCTAATAGACCGAGTATTGGATTGCATACCA ACTGGGGTTGCTCCTAGAAGCTTGATTGTTCATCAGGCAATGAAACATATCATTCGTGATAGTTTCGTTTGTTACACAACTTTTCGAAGAGAGATTGTTT TGGTTTTGGATAACTTGCTTGAAATGCCATACAGGAGTTGTGTTTCGGCATTTGGTATTTACAAGAAAGCTGCGATGCAAGCAGGTCAGCTTTGCGAGTT TTACGATTGGTGTAAGGCTAAAGGGTTCTGTGGCTCATTCGAGTACCCTTTCATAGACAGAATTCCACAGATACATATTCAGGCTCTCGAGACTTTTCTC AATGGGATGTGGCAGCTAACTAATCAATCATCATCATCATTAACTACGTCACCATCCTCGTGGGTTGAGTTTAAATCAAATTCAACGGAAGATGATGATC AAGGGAAGCAAGTTGTTAAAACAAATACTCTAATTAAGATTAGTTCTCAATTGGAGAGATCCGAAGAGAATGGCTTTGCAAGTAACTTTGAGCTGGGAAA AGAAGAGGTGGCACCTCTAATTCAGTTAGAAGAAGGGGAAGATGATAACTGGGAGGCCTTGCTGGAAGCTTCCCTTAATACTTCTTCACATGACCATCGA AAGAACTTCCTGGTTTACCCTAATAGCTTTTTGCAATGGCTATGGCGATGGACATGGGTATGA
AA sequence Show only first row Show all	>Potri.010G103200.2 pacid=42798644 polypeptide=Potri.010G103200.2.p locus=Potri.010G103200 ID=Potri.010G103200.2.v4.1 annot-version=v4.1 MHKRFRQVFCALKEHTSVSYAKIATFGGFCDVDLIIVKATAPDDLPLPEKYMHELVKIFSFSNSSFHSFSLSFTRRFGNTRSWKVALKCLILLNRLLRSL PEDSPVRAELLWIRSNGLLSLYPCHFRDDSSSNPEAYTVFIRSYAQLLDQSLDCFSLDNKATEEEVMHESLQHKIKQVSRKLELLPRLQSLIDRVLDCIP TGVAPRSLIVHQAMKHIIRDSFVCYTTFRREIVLVLDNLLEMPYRSCVSAFGIYKKAAMQAGQLCEFYDWCKAKGFCGSFEYPFIDRIPQIHIQALETFL NGMWQLTNQSSSSLTTSPSSWVEFKSNSTEDDDQGKQVVKTNTLIKISSQLERSEENGFASNFELGKEEVAPLIQLEEGEDDNWEALLEASLNTSSHDHR KNFLVYPNSFLQWLWRWTWV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03050			ENTH/ANTH/VHS superfamily prot...		Potri.010G103200 [exp]	0	1
					Potri.004G111232 [exp]	21.21	0.9127
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.004G183800 [exp]	27.27	0.9107	CYP87D11
AT4G14746			unknown protein		Potri.003G057700 [exp]	28.72	0.9102
AT2G46150			Late embryogenesis abundant (L...		Potri.011G025100 [exp]	29.52	0.9084
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Potri.010G117400 [exp]	30.00	0.8714
AT1G16060	AP2_ERF	ADAP	ARIA-interacting double AP2 do...		Potri.006G179900 [exp]	33.94	0.9095
AT2G42250		CYP712A1	"cytochrome P450, family 712, ...		Potri.016G052600 [exp]	35.59	0.9091
					Potri.001G151150 [exp]	39.66	0.9056
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Potri.015G091200 [exp]	41.13	0.9082
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.007G075100 [exp]	43.24	0.9081

Compare expression of checked genes

Potri.010G103200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.