Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34300 374 / 3e-117 lectin protein kinase family protein (.1) AT5G24080 303 / 2e-94 Protein kinase superfamily protein (.1) AT5G35370 310 / 1e-92 S-locus lectin protein kinase family protein (.1) AT4G00340 308 / 2e-92 RLK4 receptor-like protein kinase 4 (.1) AT4G32300 303 / 1e-90 SD2-5 S-domain-2 5 (.1) AT2G19130 288 / 4e-85 S-locus lectin protein kinase family protein (.1) AT4G18250 262 / 2e-75 receptor serine/threonine kinase, putative (.1) AT5G60900 256 / 4e-74 RLK1 receptor-like protein kinase 1 (.1) AT1G66980 258 / 1e-72 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT5G38280 248 / 1e-71 PR5K PR5-like receptor kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G115700 [exp] 406 / 2e-129 AT1G34300 939 / 0.0 lectin protein kinase family protein (.1) Potri.019G086200 [exp] 396 / 1e-125 AT1G34300 918 / 0.0 lectin protein kinase family protein (.1) Potri.019G086400 [exp] 391 / 1e-123 AT1G34300 904 / 0.0 lectin protein kinase family protein (.1) Potri.013G115800 [exp] 381 / 3e-120 AT1G34300 858 / 0.0 lectin protein kinase family protein (.1) Potri.013G095800 [exp] 376 / 1e-118 AT2G19130 350 / 2e-108 S-locus lectin protein kinase family protein (.1) Potri.016G102700 [exp] 375 / 1e-117 AT1G34300 356 / 5e-110 lectin protein kinase family protein (.1) Potri.016G102600 [exp] 372 / 9e-117 AT1G34300 367 / 1e-114 lectin protein kinase family protein (.1) Potri.006G091400 [exp] 370 / 3e-116 AT1G34300 372 / 3e-116 lectin protein kinase family protein (.1) Potri.016G102500 [exp] 370 / 6e-116 AT1G34300 360 / 1e-111 lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013252 [exp] 1109 / 0 AT1G34300 378 / 7e-119 lectin protein kinase family protein (.1) Lus10006052 [exp] 406 / 2e-129 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10039315 [exp] 390 / 8e-123 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1) Lus10004283 [exp] 377 / 2e-118 AT2G19130 339 / 6e-104 S-locus lectin protein kinase family protein (.1) Lus10024343 [exp] 380 / 7e-118 AT2G19130 379 / 6e-117 S-locus lectin protein kinase family protein (.1) Lus10024348 [exp] 369 / 6e-115 AT2G19130 378 / 4e-118 S-locus lectin protein kinase family protein (.1) Lus10032944 [exp] 360 / 1e-111 AT2G19130 371 / 1e-115 S-locus lectin protein kinase family protein (.1) Lus10028711 [exp] 330 / 2e-103 AT1G34300 704 / 0.0 lectin protein kinase family protein (.1) Lus10000249 [exp] 329 / 4e-100 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10029802 [exp] 323 / 2e-98 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain CL0016 [poplar] [flax] PF01453 [poplar] [flax] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Potri.010G103300.1 pacid=42800280 polypeptide=Potri.010G103300.1.p locus=Potri.010G103300 ID=Potri.010G103300.1.v4.1 annot-version=v4.1 ATGGCTCCCTTCTTTCTCTTCTTTGCTTTCCTTCTGCTATCAAATCCTTCACCATCAACATCCCAACGACAACAAAACATGACATCTTTCTCCTCCTCAG ACTCTCCATGGCTTCCGATGCAAAATAAAATCCTCCTTTCTCCCAACTCCACCTTCGCAGCCGGCTTTTACCCTGTGGACAATTCTTCAAACCACTTCAA TTTCTCAATTTGGTATTACAAATTGCCAAGAAACATCACTACTACTGTGTGGTCTGCTAATAAGCACGATTCTCCACTCTCTACCAATGCTTCTCTTGTT ATCACAGCGACTCGCGAGCTACGTTTAACCGATTCTTCAAGCAGATCAAACTTGTGGCCTGGCGCCCCTAAGTCAACAAATTCTAACTCAACCAGACTTG TTTTAAATGAAGATGGGAGTCTTGTCTATGACAAGTGGAAGAGTTTTAATTTTCCTACTGATACTTTCTTGCCCGACCAGGATATAAATGGCACTGAACT TGTCTCACAAAATGGTAAGTTCAGGTTCTTGAATTCTTCTTCTTTGTCTTTCAATTACTCTGATAATTACTGGACCTCCGATAACGTGTTTGCACAACTA AGAAGCGATGGGAGTGTGAATCAAGGAAATAGTGTTTCAATCATTTCTGCTGATTACGGGGTTGCCAGGATGCGGAGGTTGACTCTTGACAATGATGGAA ATCTAAGGGTTTACAGTTATGATGAAAGCCTTGGCCAATGGTTTATTGCTTGGCAAGCACTGCAAGAATCGTGTAAAGTTCACGGGCTTTGCGGGCCTAA TGCTATCTGCTTGACAGACGGCTCAAATTCCATGTCCTGCGTGTGCCCCCCTGGATTCAGGCAAAGTACTACAAGTCGAGAGGCATGTGAGAGGAAAAGG AAACTCACTAGCAACACCAAGTTTGTTCAGCTTGATTATGTCAATTTCACTGGTGGATCAAATCAGACAAGTCTCAATGTCAGAAATCTAACAACTTGTA GAGCAAACTGCTTGGCTCATCCTAATTGTCTTGGTTTTATGTTCAAGTATGACGGTCAAGGTTACTGTGTGCTTCAGCTTGACAGACTATTATATGGGTA CTGGTCTCCAGGGACTGAAGTTGTCATGTTCTTGCGTGTGGATAGTTCTGAAACAGATGAAACAAATTTCACTGGTATGACTCGTGTGCTGGACACCACA TGTCCTGTTCGTATAAGCCTTCCTTTCCCTCCTCAAGAATCCAACACCACAACCAGAAATATTGCAATAATATGTACGTTATTTGCTGCGGAGCTGATTT CCGGGATTCTTTTCTTTTGGGCTTTTTTGAAGAAATACATCAAGTATAGAGACATGGCTCAGACTTTAGGCCTTGAATTCCTGCCTGCTGGTGGACCTAA AAGGTTCACATATGCAGAGCTCAAAGCAGCAACAAATGACTTCTCCAATGCTATAGGAAAAGGTGGATTTGGTGATGTTTATAGAGGAGAGCTGCCTGAT AAACGAATTGTTGCAGTCAAGTGCCTGAAACATGTCACTGGAGGGGATGCTGAGTTTTGGGCAGAGGTTACAATTATTGCTAGGATGCACCATCTTAATC TGGTCAGGCTTTGGGGCTTTTGTGCGGAGAAAGGCCAAAGGATTCTAGTTTATGAGTATGTGCCTAATGGTTCTCTTGACAGGTTCCTGTTCCCTGCGGG TCGGGTACCATCTTCAGGGACCGAGGTTGAGATGGGTCTGGTGGCTATTGATGGGCGCAAACCGATGCTTGATTGGGGGATCCGATATAGGATTGCACTT GGTGTAGCTAGAGCAATCGCATACTTGCATGAAGAGTGTTTGGAGTGGGTGTTGCATTGTGATATTAAGCCGGAAAATATACTTTTAGGTGATGATTTTT GCCCAAAGATCTCAGATTTTGGGTTGGCCAAGTTGAGGAAAAAAGAAGATATGGTGAGCATGTCTCGAATCAGGGGTACTCGTGGGTACATGGCACCAGA ATGGATTAAGAGTGATCCAATCACTCCCAAGGCTGATGTCTACAGTTTCGGGATGGTGTTGCTAGAAATCGTAACTGGGTCTAGAAATTTCGAGACGCAA GGTTCTTTGATGGACAGTGAGGATTGGTATTTTCCTAGGTGGGCGTTTGACAAAGTGTTCAAGGAAATGAAGGTAGAGGACATTTTGGACCGACAGATTA AGCACTGTTATGATGGTAGAGTGCATTTTGATATGGTAGATAGGATGGTGAAGACAGCAATGTGGTGCCTTCAGGATAGGCCAGACATGAGGCCGTCAAT GGGAAAGGTTGCGAAGATGCTCGAAGGAACCGTGGAAATCACGGAACCAACGAAGCCTACCATCTTCTTCCTAGAAGATTAA
AA sequence Show only first row Show all	>Potri.010G103300.1 pacid=42800280 polypeptide=Potri.010G103300.1.p locus=Potri.010G103300 ID=Potri.010G103300.1.v4.1 annot-version=v4.1 MAPFFLFFAFLLLSNPSPSTSQRQQNMTSFSSSDSPWLPMQNKILLSPNSTFAAGFYPVDNSSNHFNFSIWYYKLPRNITTTVWSANKHDSPLSTNASLV ITATRELRLTDSSSRSNLWPGAPKSTNSNSTRLVLNEDGSLVYDKWKSFNFPTDTFLPDQDINGTELVSQNGKFRFLNSSSLSFNYSDNYWTSDNVFAQL RSDGSVNQGNSVSIISADYGVARMRRLTLDNDGNLRVYSYDESLGQWFIAWQALQESCKVHGLCGPNAICLTDGSNSMSCVCPPGFRQSTTSREACERKR KLTSNTKFVQLDYVNFTGGSNQTSLNVRNLTTCRANCLAHPNCLGFMFKYDGQGYCVLQLDRLLYGYWSPGTEVVMFLRVDSSETDETNFTGMTRVLDTT CPVRISLPFPPQESNTTTRNIAIICTLFAAELISGILFFWAFLKKYIKYRDMAQTLGLEFLPAGGPKRFTYAELKAATNDFSNAIGKGGFGDVYRGELPD KRIVAVKCLKHVTGGDAEFWAEVTIIARMHHLNLVRLWGFCAEKGQRILVYEYVPNGSLDRFLFPAGRVPSSGTEVEMGLVAIDGRKPMLDWGIRYRIAL GVARAIAYLHEECLEWVLHCDIKPENILLGDDFCPKISDFGLAKLRKKEDMVSMSRIRGTRGYMAPEWIKSDPITPKADVYSFGMVLLEIVTGSRNFETQ GSLMDSEDWYFPRWAFDKVFKEMKVEDILDRQIKHCYDGRVHFDMVDRMVKTAMWCLQDRPDMRPSMGKVAKMLEGTVEITEPTKPTIFFLED

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34300			lectin protein kinase family p...		Potri.010G103300 [exp]	0	1
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Potri.002G236500 [exp]	1.41	0.9381
AT4G25160			U-box domain-containing protei...		Potri.004G233000 [exp]	1.41	0.9346
AT3G51000			alpha/beta-Hydrolases superfam...		Potri.007G018900 [exp]	1.73	0.9290
					Potri.001G077900 [exp]	2.23	0.9258
AT1G28380		NSL1	necrotic spotted lesions 1, MA...		Potri.004G047700 [exp]	3.46	0.9242
AT1G07570		APK1A	Protein kinase superfamily pro...		Potri.008G056400 [exp]	5.29	0.9231
AT1G64950		CYP89A5	"cytochrome P450, family 89, s...		Potri.007G088154 [exp]	6.32	0.9270
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.012G038700 [exp]	6.70	0.9175	Pt-ATCNGC19.3
AT1G01490			Heavy metal transport/detoxifi...		Potri.004G073000 [exp]	7.34	0.8915
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.016G006000 [exp]	7.41	0.9125

Compare expression of checked genes

Potri.010G103300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.