Plant FIBer expression Database

Potri.010G103400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G67960 640 / 0 POD1 POLLEN DEFECTIVE IN GUIDANCE 1, unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015372
[exp]
687 / 0 AT1G67960 655 / 0.0 POLLEN DEFECTIVE IN GUIDANCE 1, unknown protein
Lus10033013
[exp]
226 / 1e-67 AT1G67960 211 / 1e-61 POLLEN DEFECTIVE IN GUIDANCE 1, unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05346 DUF747 Eukaryotic membrane protein family
Representative CDS sequence
>Potri.010G103400.1 pacid=42797421 polypeptide=Potri.010G103400.1.p locus=Potri.010G103400 ID=Potri.010G103400.1.v4.1 annot-version=v4.1
ATGGCTTGGAGATCCTCAGGCAGAAAGCTGTCCTTCGAGATTCTAAACCATAGCAGTTCCCATGAAGAAAAAGAAGACCAATATCTTGTCAATTACCAAT
CAGATCCAGTGGAGAAACCCTACCGAAAAAAGAAGAAACACAAGCGCAAACACAAGCCTCTCCATCCCGAAATCCACGAAGATTCAATCACCCATTCCTA
TTCAGTTGTCCACAATTCGCATCACACAGACAACGGAAACATCCAAAACAGTTATATAGTAGGCAGCGGCGGGAGCGTGGTTTGTAGTACGGTGAGTGAA
GTAGGGGCGGAGATTCAGCGCGTGTACGGGAACGGGGAGTTGAGGCAGAGGAATGTCAATTTTGCTGGTGTAGTGGAGACTGCTGTGGAGGAAAATGCGT
CGGAGGAGAGTGGAGTGGAGGAGAAGCAGCGGAGAAGTGAACCACCGAATGGAAGTGTTGTTACGAAGTTGGAGACGGCGGAATCATTGGATTGGAATAA
ACTCATGGCCGACGATCCTAATTATCTCTTTTCGATGGAGAAGTCACCGGTGAAGTACTTTATGGACGAAATGAATAAAGGAATTTCGTTGAGGAGCACA
ACTACTCTTGGGAGTGAGAAAGAAAGGGAGAAAGTATATGATACCATTTTTCGCTTGCCATGGAGATGTGAACTGCTTATAGATGTTGGCTTCTTTGTAT
GCCTGGATTCGTTTCTATCACTGTTAACTATTATGCCAACTAAGATTCTGATGATCCTCTGGAGGTTTCCGAGTGCCAGGCAGTTCAAGAAGCCTTCTGC
AGCAGAGCTTTCTGATATTGGCTGCTTTATTGTGTTGGCTTCTGGTGTTGTAATTTTGGGACAAATAGATATCAGCTTAATATATCACATGATTCGTGGC
CAAGGAACAATCAAACTCTATGTGGTTTACAATGTTTTGGAGATATTTGATAAACTGTGTCAGAGCTTTGGTGGAGATGTACTGCAGGCTCTATTCAATT
CTTCAGAAGGGCTTGCAAATTGTTCATCAGAAAATATGAGATTCTGGATTTTGAGATTTATCTCTGATCAAGTTTTAGCTATGGCTTTTTCAATTCTTCA
TTCTTTCATTTTATTAGCTCAGGCAATTACTTTATCAACTTGTATCGTTGCTCACAATAATGCTTTGCTGGCTTTGCTGGTATCCAATAACTTTGCTGAG
ATAAAAAGCAGCGTCTTCAAACGTTTCAGCAAAGATAACATTCACAGTTTGGTGTACTCTGATTCCATAGAGAGATTCCACATTTCAGCATTCTTATCAG
CTGTTTTAGCTCAAAATATACTGGAGGCAGAGGGTCCTTGGTTTGAGAGTTTTCTTCTTAATGCGCTCATGGTTTTTTTCTGTGAAATGTTAATTGATAT
CATAAAGCATTCATTCCTCGCCAAATTCAATGACATGAAGCCTATTGTATACTCTGAATTTCTTGAAGAGCTTTGCAACCAGACACTGAACATTCAAACA
GAGAATACAGAAAGTAGAAAGAGAACTCTTACATTCATTCCTTTGGCTCCAGCATGTGTGGTTATCCGAGTGCTGACTCCAGTATATTCTGCTCACCTCC
CCCCCAGTCCCCTTCCGTGGAGGCTTTTTTGGATCCTTTTCTTGTCTGCCTTGACCTATGTTATGCTCACAAGCCTGAAGGTGATGGTTGGCATGGGCCT
CCAAAAGCATGCCAATTGGTACGTCGAAAGGTGCCGGAGGAGGAAAAAACGTATTCACAATGATTAA
AA sequence
>Potri.010G103400.1 pacid=42797421 polypeptide=Potri.010G103400.1.p locus=Potri.010G103400 ID=Potri.010G103400.1.v4.1 annot-version=v4.1
MAWRSSGRKLSFEILNHSSSHEEKEDQYLVNYQSDPVEKPYRKKKKHKRKHKPLHPEIHEDSITHSYSVVHNSHHTDNGNIQNSYIVGSGGSVVCSTVSE
VGAEIQRVYGNGELRQRNVNFAGVVETAVEENASEESGVEEKQRRSEPPNGSVVTKLETAESLDWNKLMADDPNYLFSMEKSPVKYFMDEMNKGISLRST
TTLGSEKEREKVYDTIFRLPWRCELLIDVGFFVCLDSFLSLLTIMPTKILMILWRFPSARQFKKPSAAELSDIGCFIVLASGVVILGQIDISLIYHMIRG
QGTIKLYVVYNVLEIFDKLCQSFGGDVLQALFNSSEGLANCSSENMRFWILRFISDQVLAMAFSILHSFILLAQAITLSTCIVAHNNALLALLVSNNFAE
IKSSVFKRFSKDNIHSLVYSDSIERFHISAFLSAVLAQNILEAEGPWFESFLLNALMVFFCEMLIDIIKHSFLAKFNDMKPIVYSEFLEELCNQTLNIQT
ENTESRKRTLTFIPLAPACVVIRVLTPVYSAHLPPSPLPWRLFWILFLSALTYVMLTSLKVMVGMGLQKHANWYVERCRRRKKRIHND

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G67960 POD1 POLLEN DEFECTIVE IN GUIDANCE 1... Potri.010G103400
[exp]
0 1
AT1G72560 PSD PAUSED, ARM repeat superfamily... Potri.003G066200
[exp]
4.12 0.7711 Pt-PSD.2
AT1G54490 ATXRN4, XRN4, E... ETHYLENE INSENSITIVE 5, ACC IN... Potri.005G048900
[exp]
9.79 0.7307 XRN4.1
AT1G43860 sequence-specific DNA binding ... Potri.005G186700
[exp]
18.54 0.6648
AT4G04790 Tetratricopeptide repeat (TPR)... Potri.001G417400
[exp]
30.39 0.6176
AT5G67470 ATFH6 ARABIDOPSIS FORMIN HOMOLOG 6, ... Potri.007G054900
[exp]
30.65 0.6308
AT2G38610 RNA-binding KH domain-containi... Potri.006G111400
[exp]
30.75 0.5687
AT5G04360 ATPU1 ,ATLDA PULLULANASE 1, limit dextrinas... Potri.010G229300
[exp]
31.62 0.5931
AT1G43770 RING/FYVE/PHD zinc finger supe... Potri.005G173200
[exp]
35.22 0.6329
AT1G33980 ATUPF3, UPF3 Smg-4/UPF3 family protein (.1.... Potri.003G005700
[exp]
47.69 0.6441
AT5G66180 S-adenosyl-L-methionine-depend... Potri.007G056800
[exp]
48.46 0.6594

Potri.010G103400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.